Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CHLI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45930 599 / 0 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 596 / 0 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08520 180 / 4e-50 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063400 [exp] 692 / 0 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.009G049400 [exp] 177 / 5e-49 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 63 / 1e-11 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254308 [exp] 59 / 2e-10 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025423 [exp] 627 / 0 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10015302 [exp] 619 / 0 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1) Lus10019033 [exp] 181 / 4e-50 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 174 / 9e-48 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01078 [poplar] [flax] Mg_chelatase Magnesium chelatase, subunit ChlI
Representative CDS sequence Show only first row Show all	>Potri.004G053400.2 pacid=42795972 polypeptide=Potri.004G053400.2.p locus=Potri.004G053400 ID=Potri.004G053400.2.v4.1 annot-version=v4.1 ATGGCAACCATACTTGGAACTTCTTCCTCTGCAATCTTGGCGTCTAAACCTTTCTCCATTCCTTCTCTCTCTTTAACCTCCTCAGGGCTAAGTTTTGGGA GGAAGTATTATGGAGGGATTGGTCTTGTGGGTAAGAAAGGGAGGCCTCAGTTTCATGTTGCAGTTGCCAGTGTTGCTACTGACATTGGCTCTGTTCAGGA GGCCCAGAAGGCTGCTGCTAAGGAAAGCCAGAGACCAGTATATCCATTTGCTGCTATAGTAGGGCAAGATGAGATGAAGCTGTGCCTTTTGCTAAATGTG ATTGATCCCAAGATTGGAGGTGTCATGATCATGGGTGATAGAGGGACCGGAAAGTCCACCACTGTTAGGTCCATGGTTGATTTACTTCCAGAAATTAAGG TGGTTGCTGGTGACCCCTATAACTCAGATCCGGAAGATCCAGAGTCGATGGGTATTGAAGTCAGGGAGAGTGTTGTGAAAGGGGAGGATCTCACTGTTGT CCTGACTAAAATTAATATGGTTGACTTGCCATTGGGAGCTACAGAGGATAGGGTGTGTGGTACAATTGACATTGAAAAGGCTCTCACCGAGGGTGTAAAG GCATTTGAGCCGGGTCTTCTTGCTAAAGCTAATAGAGGCATTCTTTATGTTGATGAGGTTAATCTTTTGGATGACCACTTGGTGGATGTTCTTTTAGATT CTGCTGCATCAGGGTGGAACACAGTGGAGAGAGAGGGTATTTCAATTTCACATCCTGCACGATTTATTTTGATTGGTTCTGGCAATCCTGAAGAAGGAGA GCTAAGGCCACAGCTTCTTGATAGATTTGGAATGCACGCACAAGTGGGGACTGTTAGGGATGCAGAGCTCAGAGTTAAAATTGTGGAAGAGAGAGCTCAA TTTGACAAAAATCCAAAGGAATTTCGCGAGTCTTACAAGTCTGAGCAAGAGAAACTCCAGCAACAAATTTCCTCAGCTAGGAGTTTTCTTTCATCTGTAA AAATAGATCATGATCTTAAGGTTAAAATCTCCAAGGTTTGTTCAGAGCTGAATGTTGATGGATTGAGAGGAGACATTGTGACGAATAGAGCTGCAAAAGC TCTTGCTGCCCTGAAGGGTAGGGATCAAGTAACTGCAGAAGATATTGCTACTGTCATCCCCAATTGTTTAAGACACCGTCTTCGGAAGGATCCCTTGGAG TCAATCGACTCAGGTTTACTTGTCAGTGAGAAATTTTATGAGGTTTTTAGCTGA
AA sequence Show only first row Show all	>Potri.004G053400.2 pacid=42795972 polypeptide=Potri.004G053400.2.p locus=Potri.004G053400 ID=Potri.004G053400.2.v4.1 annot-version=v4.1 MATILGTSSSAILASKPFSIPSLSLTSSGLSFGRKYYGGIGLVGKKGRPQFHVAVASVATDIGSVQEAQKAAAKESQRPVYPFAAIVGQDEMKLCLLLNV IDPKIGGVMIMGDRGTGKSTTVRSMVDLLPEIKVVAGDPYNSDPEDPESMGIEVRESVVKGEDLTVVLTKINMVDLPLGATEDRVCGTIDIEKALTEGVK AFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERAQ FDKNPKEFRESYKSEQEKLQQQISSARSFLSSVKIDHDLKVKISKVCSELNVDGLRGDIVTNRAAKALAALKGRDQVTAEDIATVIPNCLRHRLRKDPLE SIDSGLLVSEKFYEVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	0	1	Pt-CHLI1.1
AT1G44920			unknown protein		Potri.002G114900 [exp]	2.00	0.9812
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	2.44	0.9848
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Potri.006G246500 [exp]	3.16	0.9775
AT1G67700			unknown protein		Potri.010G053600 [exp]	3.46	0.9802
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.019G117900 [exp]	4.00	0.9779
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	5.47	0.9796	Lil3_3,Pt-LIL3.1
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	6.00	0.9779
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	8.00	0.9800
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	8.83	0.9786	PSAD1.1
AT5G17670			alpha/beta-Hydrolases superfam...		Potri.013G070700 [exp]	9.59	0.9713

Compare expression of checked genes

Potri.004G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.