Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28680 602 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07080 240 / 3e-74 HXXXD-type acyl-transferase family protein (.1) AT3G47170 234 / 8e-72 HXXXD-type acyl-transferase family protein (.1) AT2G23510 221 / 4e-67 SDT spermidine disinapoyl acyltransferase (.1) AT2G25150 205 / 6e-61 HXXXD-type acyl-transferase family protein (.1) AT5G41040 194 / 9e-57 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 172 / 5e-49 HXXXD-type acyl-transferase family protein (.1) AT1G03390 167 / 2e-46 HXXXD-type acyl-transferase family protein (.1) AT3G48720 164 / 1e-45 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 158 / 3e-43 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126400 [exp] 268 / 2e-84 AT5G07080 374 / 9e-126 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 186 / 7e-54 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 181 / 2e-52 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G447500 [exp] 181 / 1e-51 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 179 / 5e-51 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.006G157100 [exp] 179 / 5e-51 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 179 / 8e-51 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 177 / 2e-50 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 175 / 2e-49 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015303 [exp] 478 / 4e-167 AT1G28680 412 / 3e-141 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 194 / 8e-57 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10033079 [exp] 170 / 1e-47 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10017744 [exp] 170 / 2e-47 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10005439 [exp] 167 / 7e-47 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 159 / 1e-43 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 159 / 1e-43 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 155 / 2e-42 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 155 / 3e-42 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10004527 [exp] 155 / 3e-42 AT3G62160 452 / 8e-158 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.004G053500.1 pacid=42796222 polypeptide=Potri.004G053500.1.p locus=Potri.004G053500 ID=Potri.004G053500.1.v4.1 annot-version=v4.1 ATGGAAGAAATTCACATCAAAGAAACCATTCCCATTCGCCCTTCTACGCCCCCTTTCTCTCAAGACCATACACTCCCTCTCTCCCACCTTGACACCGACC GCAACCTTAATGTGACATTTCGCTACCTTCGTGTCTACGTTAACACCACCACCAGCAATGGTGGCCATCCTTTCAACGTCATCGCTGCTGCGCTTTCCTC TGCTCTTGTTCACTACTACCCTCTTGCAGCCACTCTCCGCCGAGGCCAGGTGGATGACCGTCTGGAGCTGTTTTGCACTCGGGACCATTTAGGTGTGCCT CTTATCAATGCAACTGTAAACTGCACGTTGGAAAAACTGAACTACCTTGATGACTCGGACCCGAATTTTCTGGACGGGTTAGTTCCTGACCCGGATCAAG ATTATGGGCTGGCTAACCCGTGTGTTCTCCAAGTCACGGTGTTTGAGTGTGGTGGATGGACATTAGGTGCTGCCATACACCATGGTTTGTGTGATGGGCT TGGGGCAACCCAGTTTTTTAATGTTATGGCAGAGTTGGCACGTGGTGTGGGTCGGATTTCAGCTAATCCAGTTTGGGACCGGGCGCGCTTGTTGGGTCCG AGAGACCCGCCCCGAGCTGAGGGAGTGGTGAGGGAGTTTTTGGGGTTGGAGAAAGGGTCTGAGCCTTACGGTCAGGTGGTTGGTGAGGTTGTGAGGGAGT GCTTTCCTGTGAAGGATGAGTGGTTGGAGAAGTTCAAGAAGGTGTTGTTTGAGAAGAGTGGCTCTAGCTTTACCACGTTTGAAGCCTTGGGTGCATTCAT ATGGCGGGCAAAGGTTAAAGCCTCAGGGGTTCCAGGTGATGAGAATGTGAAGTTCGCCTATTCAATCAATATACGAAAACTAGTAAAGCCACCATTACCT GCTGGCTATTGGGGCAATGGTTGTGTTCCGATGTATGCTCAACTCTGTGCCAGAGAGCTGATAGAGCAACCAGTTTGGAAAACAGCTGAGCTGATTAAAA AGAGCAAAATCAACGCAACCGATGAGTACGTCCGCTCATTCATTGATTTTCAAGAACTACATTATGGAGATGGCATTACAGCAGGAAACAGAGTGAGTGG GTTCACAGATTGGAGGCACCTGGGACATTCAACTGTTGATTTTGGGTGGGGAGGTCCGGTCACTGTCTTGCCACTTTCAAGAAAACTACTCGGAAGTGTT GTGCCGTGCTTTTTCTTGCCTTATTCTTCTGCAAATGCAGGCAAGAAGGATGGGTTCAAGGTGCTGGTAACCTTGCAAGAAACACACATGCCTGCCTTCA AGAAAGAGATGGAGAAATTTAGCAGACAAGATTTTGACTTGTCTTGA
AA sequence Show only first row Show all	>Potri.004G053500.1 pacid=42796222 polypeptide=Potri.004G053500.1.p locus=Potri.004G053500 ID=Potri.004G053500.1.v4.1 annot-version=v4.1 MEEIHIKETIPIRPSTPPFSQDHTLPLSHLDTDRNLNVTFRYLRVYVNTTTSNGGHPFNVIAAALSSALVHYYPLAATLRRGQVDDRLELFCTRDHLGVP LINATVNCTLEKLNYLDDSDPNFLDGLVPDPDQDYGLANPCVLQVTVFECGGWTLGAAIHHGLCDGLGATQFFNVMAELARGVGRISANPVWDRARLLGP RDPPRAEGVVREFLGLEKGSEPYGQVVGEVVRECFPVKDEWLEKFKKVLFEKSGSSFTTFEALGAFIWRAKVKASGVPGDENVKFAYSINIRKLVKPPLP AGYWGNGCVPMYAQLCARELIEQPVWKTAELIKKSKINATDEYVRSFIDFQELHYGDGITAGNRVSGFTDWRHLGHSTVDFGWGGPVTVLPLSRKLLGSV VPCFFLPYSSANAGKKDGFKVLVTLQETHMPAFKKEMEKFSRQDFDLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28680			HXXXD-type acyl-transferase fa...		Potri.004G053500 [exp]	0	1
AT2G31945			unknown protein		Potri.001G010600 [exp]	4.89	0.6263
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010300 [exp]	16.67	0.6672
AT5G18730			unknown protein		Potri.008G196301 [exp]	45.69	0.4309
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	52.91	0.6119
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.005G169100 [exp]	92.64	0.4910
AT5G13560			unknown protein		Potri.008G048100 [exp]	96.87	0.4253
AT3G55570			unknown protein		Potri.001G313801 [exp]	102.74	0.5745
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037300 [exp]	109.99	0.5951
					Potri.013G104150 [exp]	115.12	0.4218
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010200 [exp]	141.35	0.5377

Compare expression of checked genes

Potri.004G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.