Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 234 / 8e-78 SGNH hydrolase-type esterase superfamily protein (.1) AT3G11210 155 / 1e-46 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 148 / 4e-43 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063800 [exp] 422 / 7e-152 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 231 / 3e-76 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 150 / 9e-45 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 150 / 2e-44 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 147 / 2e-43 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 147 / 3e-43 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 144 / 2e-42 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 141 / 2e-41 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000525 [exp] 358 / 1e-126 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 268 / 9e-92 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 228 / 4e-75 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 165 / 3e-50 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 164 / 1e-49 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 160 / 2e-48 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 132 / 2e-36 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 103 / 3e-28 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 104 / 4e-26 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013940 [exp] 97 / 5e-26 AT5G45920 80 / 3e-20 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G053800.1 pacid=42795857 polypeptide=Potri.004G053800.1.p locus=Potri.004G053800 ID=Potri.004G053800.1.v4.1 annot-version=v4.1 ATGAGACCAAAGATTTATCTTTTTGGCGACTCTATCACTGAAGTTTCCTTTGGTGATGGTGGTTGGGCTGCCTCTCTCAGCAACCATTTCTCTCGCACGG TTGATGTTGTGCTGAAAGGGCATAGTGGGTACAATACCAGGTGGGCTCTTAAGGTGGCAGAGAGGATATTTCCGCCGGTGGGAAGTGGTGGTGCACCGAC TTTGGCTGTTACTGTGTTTTTTGGTGCAAACGATGCTTGCCTTTCCGATAGATACGCTGCCTTTCAACACGTGCCTCTCCATGAATACAAGCAGAACCTT CACTCTCTCATCTCATTTTTCAAGAAGCGTTGGGCAGAGACTGTTATTCTCCTCGTCACTCCTCCTCCAATTGACGAAGATGCACGCCTCCGACATCCAT ACATGGAGAACCCATCAGGTCTACCTGAGAGGACAAATGAAGCTGCTGGTGCTTATGCTCAGACATGCATTTCTGTTGCCAAAGAATGTGGATGCCCAGT GGTAGATCTCTGGACCAAAATACAAGAGTTTCCTGACTGGAAGGAAGCTTGTCTATGTGATGGCTTGCATCTTACTCAGACTGGCAACAGGATTGTGTTC GAGGAAGTGGTCAAGATACTGGAGGAGCAGGGCTTAAGTCCAGGAAAATTGCCAGCTGAGGCCCCACTTTTCGCCGACATTGACCCTAAGGATCCACTCA AAGCATTTGAGGGTTATTAA
AA sequence Show only first row Show all	>Potri.004G053800.1 pacid=42795857 polypeptide=Potri.004G053800.1.p locus=Potri.004G053800 ID=Potri.004G053800.1.v4.1 annot-version=v4.1 MRPKIYLFGDSITEVSFGDGGWAASLSNHFSRTVDVVLKGHSGYNTRWALKVAERIFPPVGSGGAPTLAVTVFFGANDACLSDRYAAFQHVPLHEYKQNL HSLISFFKKRWAETVILLVTPPPIDEDARLRHPYMENPSGLPERTNEAAGAYAQTCISVAKECGCPVVDLWTKIQEFPDWKEACLCDGLHLTQTGNRIVF EEVVKILEEQGLSPGKLPAEAPLFADIDPKDPLKAFEGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45920			SGNH hydrolase-type esterase s...		Potri.004G053800 [exp]	0	1
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	1.73	0.9102
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	3.74	0.8993	Pt-ATMRP14.3
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	6.48	0.8918
					Potri.012G082300 [exp]	8.77	0.8742
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	12.48	0.8733
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	13.78	0.8832	Pt-GLU1.2
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	16.30	0.8518
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	21.07	0.8736
					Potri.004G212550 [exp]	21.16	0.8727
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	21.35	0.8669

Compare expression of checked genes

Potri.004G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.