Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28690 672 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 316 / 2e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 314 / 6e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 303 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 304 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 304 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 289 / 8e-91 MEF21 mitochondrial editing factor 21 (.1) AT3G26782 290 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 289 / 1e-89 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 288 / 7e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175900 [exp] 330 / 8e-107 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 328 / 7e-104 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G321700 [exp] 314 / 2e-99 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 313 / 4e-98 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 311 / 5e-98 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 309 / 4e-97 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 311 / 5e-97 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 305 / 9e-96 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G021300 [exp] 307 / 2e-95 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025420 [exp] 738 / 0 AT1G28690 634 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015308 [exp] 737 / 0 AT1G28690 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 319 / 1e-102 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 315 / 2e-98 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 311 / 4e-98 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 311 / 7e-98 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 303 / 5e-95 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 303 / 8e-94 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 298 / 4e-93 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 297 / 4e-93 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.004G054000.2 pacid=42795595 polypeptide=Potri.004G054000.2.p locus=Potri.004G054000 ID=Potri.004G054000.2.v4.1 annot-version=v4.1 ATGCCTATGCCATTGCATTTTCCTCAAAACGACCACATTTCTCCCAAGGTTCTTTCAGCTCTATCAAATAAAACGATTCTTCATCACAGGCAAGTGAACA AATCAAATGGCAACATGAAAAAGGTCAAACTAGCCACAATCAGACCGTACATTTTCTCATCAACCTGTAACTACACATCTCTTCGCCCATCAAATGTATT CCCGCCAAATCAAGAAGACTACATTACCCACCAAACTCCCACCACTCTGTCCTCAGCTCTTCAACACTACATCAACTCAGATACCCCTTTTCATGGCCAA AAGATCCATACCCATATTTTAAAAACTGGGTTTCGACCCAATATTAATATCTCTATCAAACTTCTGATCCTCCATTTAAAATGTCGGTGTCTGAAGTATG CACACCAGCTGTTTGATGAATTGCCTCAACGAACTCTTTCAGCTTATAATTATATGATTGGTGGGTACTTGAGACAAGGGTTATTTGAAGAGTCGATTAG TATGGTTCGTAGGTTGGATCTTGATGGTGAAAGGCCTGATGGGTTTACCTTTTCGATGATTTTAAAGGCTTCTACTAGTGGTGCTAATGTTATGTTGCCC CGTAATACAGGGGGTTTAGTGCATGCCCAGATATTGAAACTAGATGTTAAGGCCGATGATGTTCTTTATACAGCGCTTGTTGATTCGTATGTGAAGAGTG GGAAGGTTGGCTATGCAAGGAAAGTTTTTGATCTGATGTTGGAAAAGAATGTGATTTGTTCGACATCGATGATTTCTGGGTACATGAATCAAGGCTTTGT GGAAGATGCTGAAGAGATTTTTTGGAAGACAGTTGAAAAAGACATCGTGGTTTTTAATGCAATGATTGAAGGTTATAGCAAATCTGTTGAAACAGCTATG AAAGCTCTTGAGGTATATGTTGATATGCAACGGTTTGGCTTGAGGCCTAACGGGTCCACTTTTGCAAGTGTCTCTGGGGCTTGCTCTGTGTTGGCAGGAT TTGAGATTGGTCAGCAAGTTCAGTGCCAGCTTATGAAAAGTGGGTTTTTCAACGGTGTAAAAATGGGAAGTGCTCTTATAGACATGTATTCAAAATGTGG TAGAATTGAGGATGCAAGAAGAGTTTTCAACTACATGCCAGTGAGAAATGTGTTTTCCTGGACTTCAATGATTGATGGATATGGGAAGAATGGAGAACCC TGGGAAGCGCTTGAGCTATTTCATAGGATGCAACAGTGCAATATTGAGCCCAATTACGTTACTTTCCTTGGTGCTCTGTCAGCCTGTGGACACGCTGGCT TGGTCACTAAAGGCCGTGAGATCTTTGATAGTATGGAGAGAGATTATTCCACGAAACCAAGGATGGAGCATTATGCTTGCATGGTTGATTTGTTAGGCCG TGCTGGAAATTTACAGCAGGCATGGGAGCTTGTTAAAGGAATGCCTGAGAAGCCAAATTCTGATGTTTGGGCAGCTCTGCTTAGTTCTTGTAATATGCAT GGCAATGTAGAAATGGCACGTGTAGCTGCCAATAAACTTTTTAAGATAAATGCTATAGGTCGACCTGGTGCGTATGTTGCGTTATCGAATACCTTGGCCG CTGCTGAGAGATGGGATAGTGTGAGTGAGCTTAGGGAGATGATGAAGTTAAGAGGGATATCAAAAGATACTGCTTGCAGTTGGGTTGGGACTGAAGTTGA TTTATAA
AA sequence Show only first row Show all	>Potri.004G054000.2 pacid=42795595 polypeptide=Potri.004G054000.2.p locus=Potri.004G054000 ID=Potri.004G054000.2.v4.1 annot-version=v4.1 MPMPLHFPQNDHISPKVLSALSNKTILHHRQVNKSNGNMKKVKLATIRPYIFSSTCNYTSLRPSNVFPPNQEDYITHQTPTTLSSALQHYINSDTPFHGQ KIHTHILKTGFRPNINISIKLLILHLKCRCLKYAHQLFDELPQRTLSAYNYMIGGYLRQGLFEESISMVRRLDLDGERPDGFTFSMILKASTSGANVMLP RNTGGLVHAQILKLDVKADDVLYTALVDSYVKSGKVGYARKVFDLMLEKNVICSTSMISGYMNQGFVEDAEEIFWKTVEKDIVVFNAMIEGYSKSVETAM KALEVYVDMQRFGLRPNGSTFASVSGACSVLAGFEIGQQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGKNGEP WEALELFHRMQQCNIEPNYVTFLGALSACGHAGLVTKGREIFDSMERDYSTKPRMEHYACMVDLLGRAGNLQQAWELVKGMPEKPNSDVWAALLSSCNMH GNVEMARVAANKLFKINAIGRPGAYVALSNTLAAAERWDSVSELREMMKLRGISKDTACSWVGTEVDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	0	1
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	2.82	0.8999
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	3.00	0.8630
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.003G087100 [exp]	3.87	0.8687
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	9.59	0.8862
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	12.48	0.8537
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	12.96	0.8706
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	14.00	0.8527
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	15.68	0.8737
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	16.09	0.8671
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082366 [exp]	20.19	0.7946

Compare expression of checked genes

Potri.004G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.