Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDC1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33070 949 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 947 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT5G01320 945 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 920 / 0 PDC3 pyruvate decarboxylase-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151900 [exp] 1122 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 1069 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 938 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 928 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.012G098300 [exp] 66 / 4e-11 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 63 / 5e-10 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015291 [exp] 989 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10003384 [exp] 941 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 938 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 922 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 919 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10018181 [exp] 610 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10025654 [exp] 608 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10016751 [exp] 61 / 3e-09 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 50 / 1e-06 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 46 / 4e-05 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [poplar] [flax] FAD_DHS PF00205 [poplar] [flax] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain CL0254 [poplar] [flax] THDP-binding PF02775 [poplar] [flax] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [poplar] [flax] THDP-binding PF02776 [poplar] [flax] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G054100.1 pacid=42794880 polypeptide=Potri.004G054100.1.p locus=Potri.004G054100 ID=Potri.004G054100.1.v4.1 annot-version=v4.1 ATGGCACACCCCAGCTCAGCTCTAGCTCCAGCTCCTGTTCCTGGCCATACCTTCAGTGGAACTTTGGGGCATCATTTAGCTCGGCGGCTAGTAGAGATCG GCGTGAGTGATGTGTTCTCTGTTCCCGGAGACTTCAACTTGACACTTTTAGACCATTTGATAGATGAACCAGAGCTGAACTTGATCGGCTGCTGTAACGA GCTGAACGCTGGCTATGCTGCTGATGGTTATGCACGTGCCAAAGGTGTCGGGGCATGTGTGGTGACTTTTACTGTAGGTGGGCTTAGTGTGCTTAATGCG ATCGCTGGTGCTTATAGTGAGAATTTGCCTATTATCTGTATTGTTGGTGGGCCCAATTCCAATGATTATGGAACGAACAGGATTCTGCATCACACTACTG GGTTGCCTGATTTTACACAGGAGCTCAGGTGCTTTCAGACGGTCACTTGCGTTCAAGCAGTGGTGACCAACTTGGACGATGCACATGAGCAGATTGACAC GGCAATCTCTACTGCTCTGAAGGAAAGTAAACCAGCTTATATTAGTATAAGCTGTAATTTGTCTGGAATCCCTCATCCAACTTTCTCTAGGGAACCTGTG CCATTCTTTCTGGCACCCAAGGTTAGCAACTATTTAGGATTAGAAGCAGCTGTTGAAGCAACTGCCGAATTTCTGAATAAAGCTGTGAAGCCTGTCATTA TTGGCGGACCCAAGCTTAGAGTAGCAAAGGCCCAGAAGGCCTTTATAGAATTAGCAGATGCCAGTGGATATCCCATAGCTGTCATGCCTTCTGGGAAAGG GCTAGTGCCAGAGCACCACCCTCACTTCATAGGGACATATTGGGGTGCTGTGAGCACCAGCTTCTGTGCGGAGATAGTAGAGTCTGCTGATGCCTATGTT TTTGTTGGTCCCATCTTCAATGATTATAGCTCTGTTGGATATTCTTTGCTGATCAAGAAGGAGAAATCAATCATAGTGCAGCCTAATCGAGTGACTATTG GCAATGGCCTTTCGCTTGGATGGGTTTTTATGGCTGACTTCTTAAGTGCTTTGGCCAAAAAACTGAAGAAAAACAGCACAGCTTTGGAAAATTACAGACG CATCTTTGTCCCTCCTGGCACGCCTTTGATGCGTGAGAAAGATGAGCCTCTTAGGGTCAATGTACTCTTCAAGCACATTCAGAACATGTTAGGGGGAGAT TCTGCTGTAATTTCTGAAACCGGAGACTCATGGTTTAACTGTCAGAAACTCTGCCTCCCTGAGAACTGTGGGTATGAATTTCAGATGCAGTATGGATCAA TTGGCTGGTCAGTTGGTGCAACTCTTGGTTATGCTCAGGCAGCTAGAGATAAGCGCGTGATTGCCTGTATAGGTGATGGGAGTTTCCAGGTAACAGCTCA GGATATTTCAACTATGATCCGATGTGGGCAAAGGACTATCATATTCCTCATCAACAATGGAGGTTATACGATTGAAGTAGAGATTCATGATGGTCCTTAC AATGTAATCAAGAACTGGGACTACACTGGCCTTGTTAATGCCATCCACAATGGCGAAGGCAAATGCTGGACAGCAAAGGTGCGCACGGAGGATGAATTGA CAGCAGCAATAGCGACAGCAACAGGAGAACAAAAGGATTCTCTCTGTTTCATTGAGATTTTCGTGCACAAGGATGACACTAGCAAAGAGCTGCTGGAGTG GGGATCTCGAGTTTCAGCCGCAAACAGCAGACCTCCAAACCCCCAGTAA
AA sequence Show only first row Show all	>Potri.004G054100.1 pacid=42794880 polypeptide=Potri.004G054100.1.p locus=Potri.004G054100 ID=Potri.004G054100.1.v4.1 annot-version=v4.1 MAHPSSALAPAPVPGHTFSGTLGHHLARRLVEIGVSDVFSVPGDFNLTLLDHLIDEPELNLIGCCNELNAGYAADGYARAKGVGACVVTFTVGGLSVLNA IAGAYSENLPIICIVGGPNSNDYGTNRILHHTTGLPDFTQELRCFQTVTCVQAVVTNLDDAHEQIDTAISTALKESKPAYISISCNLSGIPHPTFSREPV PFFLAPKVSNYLGLEAAVEATAEFLNKAVKPVIIGGPKLRVAKAQKAFIELADASGYPIAVMPSGKGLVPEHHPHFIGTYWGAVSTSFCAEIVESADAYV FVGPIFNDYSSVGYSLLIKKEKSIIVQPNRVTIGNGLSLGWVFMADFLSALAKKLKKNSTALENYRRIFVPPGTPLMREKDEPLRVNVLFKHIQNMLGGD SAVISETGDSWFNCQKLCLPENCGYEFQMQYGSIGWSVGATLGYAQAARDKRVIACIGDGSFQVTAQDISTMIRCGQRTIIFLINNGGYTIEVEIHDGPY NVIKNWDYTGLVNAIHNGEGKCWTAKVRTEDELTAAIATATGEQKDSLCFIEIFVHKDDTSKELLEWGSRVSAANSRPPNPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33070			Thiamine pyrophosphate depende...		Potri.004G054100 [exp]	0	1	PDC1.3
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	2.00	0.7148
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037200 [exp]	5.91	0.6592
AT4G00770			unknown protein		Potri.002G152700 [exp]	11.66	0.6928
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	26.98	0.6199
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	27.71	0.6743
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	37.94	0.5787
AT1G77855			unknown protein		Potri.019G084400 [exp]	39.68	0.6053
AT5G05800			unknown protein		Potri.006G116400 [exp]	41.98	0.6063
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	44.12	0.6388
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	45.60	0.6406	IDH1.2

Compare expression of checked genes

Potri.004G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.