Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53240 520 / 0 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 519 / 0 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT2G22780 417 / 2e-146 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 395 / 4e-138 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G47520 382 / 1e-131 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 67 / 1e-13 malate dehydrogenase-related (.1) AT5G43330 52 / 2e-07 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT4G17260 50 / 8e-07 Lactate/malate dehydrogenase family protein (.1) AT1G04410 49 / 3e-06 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096300 [exp] 529 / 0 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 518 / 0 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.009G081600 [exp] 413 / 7e-145 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 411 / 5e-144 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 405 / 1e-141 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G102000 [exp] 390 / 4e-135 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 386 / 2e-133 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 386 / 3e-133 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 327 / 3e-112 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017939 [exp] 525 / 0 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 519 / 0 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10013680 [exp] 468 / 4e-167 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 408 / 9e-143 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 388 / 1e-134 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10019096 [exp] 387 / 9e-134 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 385 / 6e-133 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10011587 [exp] 386 / 9e-132 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10021666 [exp] 381 / 3e-131 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 379 / 1e-130 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G054200.1 pacid=42796323 polypeptide=Potri.004G054200.1.p locus=Potri.004G054200 ID=Potri.004G054200.1.v4.1 annot-version=v4.1 ATGAAGGCTGCAGTGTTAAGATCTTCTCGGGCAGCATTAAGGCCATGCACATGCAGGCACCTTGTTGGCCGATCATACTCATCAACAGAGTCTAGCCCAG AAAGCAAAGTGGCAATACTTGGTGCAGCAGGTGGCATAGGGCAGCCGTTGGCTTTGCTTATGAAGTTAAACCCACTAATCTCATCCCTCTCCCTCTATGA CATAGCCAACACTCCTGGAGTTGCTGCTGATGTTAGCCACATCAATTCTCGTGCTCAGGTTGCGGGGTATGCTGGGGAAGAACAACTAGGGGAAGCATTA GACGGATCAGATATCGTGATTATTCCAGCAGGTGTTCCAAGAAAACCCGGAATGACTCGTGATGATCTCTTCAAAATCAATGCAGGAATTGTCAAATCTT TATGCACAGCCATCGCAAAATACTGCCCTAATGCTCTGGTTAATATGATAAGCAATCCAGTGAATTCTACTGTCCCGATAGCTGCTGAAGTTTTCAAGAA GGCAGGGACATTTGACGAGAGGAAGCTGTTTGGTGTGACAACGCTTGATGTAGTCAGAGCTAAAACTTTCTATGCTGGGAAGGTTAAAGTTCCCGTGGCT GAGGTTAATGTGCCAGTAGTTGGTGGGCATGCTGGCATAACCATCCTCCCTCTTTTCTCTCAGGCCGCTCCCAAATCCAGTAATTTATCAGATGATGACA TAAAGGCTCTCACAAAGCGAACACAGGATGGAGGAACTGAGGTTGTGGAAGCGAAGGCTGGAAAGGGATCAGCAACACTTTCCATGGCCTACGCTGGAGC TGTCTTTGCTGATGCTTGCTTAAAGGGGCTCAATGGAGTTCCAGATATTGTTGAATGCTCCTTTGTGCAATCAAGCATCACTGATTTGCCTTTCTTTGCC TCTAAGGTAAGGCTAGGAAAGAATGGCGTGGAGGAAGTCTTTGGATTGGGTCCTCTTTCAGACTATGAACAACAGGGTCTTGAAAGCCTCAAGCCGGAGC TTAAAGCTTCTATAGAGAAGGGAGTTGAGTTTGCCAACCAAAATTAA
AA sequence Show only first row Show all	>Potri.004G054200.1 pacid=42796323 polypeptide=Potri.004G054200.1.p locus=Potri.004G054200 ID=Potri.004G054200.1.v4.1 annot-version=v4.1 MKAAVLRSSRAALRPCTCRHLVGRSYSSTESSPESKVAILGAAGGIGQPLALLMKLNPLISSLSLYDIANTPGVAADVSHINSRAQVAGYAGEEQLGEAL DGSDIVIIPAGVPRKPGMTRDDLFKINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTFDERKLFGVTTLDVVRAKTFYAGKVKVPVA EVNVPVVGGHAGITILPLFSQAAPKSSNLSDDDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSSITDLPFFA SKVRLGKNGVEEVFGLGPLSDYEQQGLESLKPELKASIEKGVEFANQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Potri.004G054200 [exp]	0	1
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Potri.017G152000 [exp]	1.00	0.8714
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	11.61	0.6912
AT4G05090			Inositol monophosphatase famil...		Potri.004G033200 [exp]	17.54	0.8105
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	63.45	0.6119
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	89.32	0.6432
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	163.21	0.6129
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.003G121900 [exp]	193.32	0.6253
AT4G07940			Protein of unknown function (D...		Potri.006G202400 [exp]	214.94	0.6156

Compare expression of checked genes

Potri.004G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.