Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45910 377 / 9e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 311 / 8e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 307 / 3e-102 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 303 / 8e-101 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28670 303 / 1e-100 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 302 / 4e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 298 / 6e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 295 / 1e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 295 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 290 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 321 / 9e-108 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 256 / 1e-82 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 239 / 3e-76 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 221 / 3e-69 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 221 / 3e-69 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 221 / 5e-69 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.015G089700 [exp] 218 / 1e-67 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 202 / 1e-61 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 199 / 1e-60 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013938 [exp] 297 / 3e-98 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 288 / 9e-95 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 226 / 6e-71 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 236 / 1e-70 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034763 [exp] 219 / 4e-68 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10033302 [exp] 209 / 2e-63 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015476 [exp] 210 / 5e-63 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 199 / 1e-60 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 179 / 2e-51 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10019947 [exp] 169 / 1e-49 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G054400.2 pacid=42796630 polypeptide=Potri.004G054400.2.p locus=Potri.004G054400 ID=Potri.004G054400.2.v4.1 annot-version=v4.1 ATGAAGATGTTGATCACCCTAATTCTTTCCTTTTGCCTCATTTTTGGTTTCAATGTCGATATAGTTTCGACAACTCCATTGCAGTATGACTCAATTTTCA ACTTTGGTGACTCTCTTAGTGACACTGGAAATTTCCTTCTTTCCGGTGCTATGGCATTTCCTGTGATTGCAAAGCTCCCTTATGGTGAAACCTTCTTTCG ACACGCAACCGGCCGGTGCTCCGATGGACGTCTAGTTGTTGACTTCATCTCTGAGGCATCTGGGTTGCCACACTTGCCACCCTATCTAGCACTCGGCAAA GATCAGCTGCATTCCTTTCATGGAGTAAATTTCGCTGTTGCTGGAGCTACTGCTCTTGATGCTAAATTCTTTTACGACCAACGTATTGGAAAAATTATGT GGACAAACGATTCATTGAGTGTTCAGCTTGGATGGTTCAAACAGTTGAAGTCCTCTCTTTGTACCAGCAAACAAGAATGTGATAATTACTTCAAAAAATC GTTATTTCTTGTGGGAGAGATTGGAGGAAACGACTATAATTATGCCTACTTTGCTGGTGGAAGCATTAAACAATTGAGAGCTTCTGTGCCTCTTGTTGTT GAAGCACTTGCTAAGGCTACCAGTTTTTTGATAGAAGAAGGGGCTGTGGAATTGTTGGTGCCGGGGAATTTGCCGATTGGATGCTCGGCAGTGTATCTGA CCCTGTTCGGAAGTCCTAACAGAACAGACTATGATCGGAATGGGTGTTTGAAAGCTTACAATGCCTTCTCCAAGTACCATAACAATCAACTCAAAACAGC CCTGCAGATGCTGAGACAAAAATACCCACATGCTAGGATAATATATGCTGACTACTATGGTGCAGCCAAGCGTTTCTACCACGCGCCACAACATCATGGA TTTACAGGTGGAACTCTGACGGCTTGTTGTGGAGGGGGTGGACCATACAATTTCAATAACTCGGCAAGGTGCGGGCACATAGGCTCAAGAACATGTAGCA ATCCTTCCAGCCACGCAAATTGGGATGGAATTCACTTGACAGAAGCTGCTTACAGGTACATTGCCATGGGTTTGGTCAGCGGCTCTTTCACTACACCACC CCTGTGA
AA sequence Show only first row Show all	>Potri.004G054400.2 pacid=42796630 polypeptide=Potri.004G054400.2.p locus=Potri.004G054400 ID=Potri.004G054400.2.v4.1 annot-version=v4.1 MKMLITLILSFCLIFGFNVDIVSTTPLQYDSIFNFGDSLSDTGNFLLSGAMAFPVIAKLPYGETFFRHATGRCSDGRLVVDFISEASGLPHLPPYLALGK DQLHSFHGVNFAVAGATALDAKFFYDQRIGKIMWTNDSLSVQLGWFKQLKSSLCTSKQECDNYFKKSLFLVGEIGGNDYNYAYFAGGSIKQLRASVPLVV EALAKATSFLIEEGAVELLVPGNLPIGCSAVYLTLFGSPNRTDYDRNGCLKAYNAFSKYHNNQLKTALQMLRQKYPHARIIYADYYGAAKRFYHAPQHHG FTGGTLTACCGGGGPYNFNNSARCGHIGSRTCSNPSSHANWDGIHLTEAAYRYIAMGLVSGSFTTPPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45910			GDSL-like Lipase/Acylhydrolase...		Potri.004G054400 [exp]	0	1
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G164700 [exp]	1.00	0.9997
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Potri.008G025500 [exp]	1.41	0.9997
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024800 [exp]	1.73	0.9994
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	3.46	0.9989
AT1G07080			Thioredoxin superfamily protei...		Potri.016G122000 [exp]	4.89	0.9966
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.009G104600 [exp]	5.47	0.9972
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	6.00	0.9973
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.006G069400 [exp]	8.48	0.9941
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G113100 [exp]	8.83	0.9965
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	11.00	0.9966

Compare expression of checked genes

Potri.004G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.