Plant FIBer expression Database

Potri.004G054500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18540 593 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G064300
[exp]
910 / 0 AT4G18540 547 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036093
[exp]
752 / 0 AT4G18540 621 / 0.0 unknown protein
Lus10013937
[exp]
711 / 0 AT4G18540 549 / 0.0 unknown protein
Lus10008576
[exp]
694 / 0 AT4G18540 551 / 0.0 unknown protein
Lus10036092
[exp]
171 / 7e-51 AT4G18540 120 / 1e-32 unknown protein
Lus10000522
[exp]
86 / 1e-19 AT4G18540 90 / 8e-22 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G054500.2 pacid=42794420 polypeptide=Potri.004G054500.2.p locus=Potri.004G054500 ID=Potri.004G054500.2.v4.1 annot-version=v4.1
ATGCAATCTCCTGTGAGGTTTTCAAGCTGCCGAGGAGTATCCTTCGAAATCAAACCTCGTGAAAATCCATTTGCCATTTCTGCACCATCCAATGATGAGG
CGGGAGGCAGCACACGAATTTGGCTTCCTTGGACTCTAGGAAGCTCCTCCAAGGTGTTCCCTTCTATCTACAGTTCTTCAAGTAGACCCAGTAGCCATTT
CTGTGATCTTGATCTTGATGGTGAGGATGATCAAGATGACATTTCTTTGGCAGTGTTAGAAGAAGGTAAAGTGGAGGAAAATGAGCAGAAACTAGCTCCG
TTTCCATCTGCAACTAAGCTAGAGCAGCCATCAAAACCTGCTCGAAAGCAAGAATCAAGACTGTCGGTGATATTGCTGGACCAAGGCTTGTTCACCGTAT
ACAAGCGACTCTTTGTCGTTTGCTTGACCCTGAACATCACTGGTTTGGTACTTGCAGCAACTGGGAAATTCCCATATGCAAGAAATAGAGCTGCCCTGTT
CTCCATAGCCAACATTCTTGCTTTGACTCTCTGCAGGAGTGAGGCGTTTTTGCGAGTTGTTTTCTGGATCGCAGTCAAGGTCATTGGGAGGTCTTGGATA
CCTCTCCCAATCAAAACCGCCACCACATCTCTACTTCAAAGTCTTGGTGGCATACACAGCAGTTGTGGAATTTCTTCAGTTGCTTGGCTCATATATGCCT
TAGTCCTTACTCTTAAGAACAGAGAAAACACTTCGCCAGAGATTGTAGGAGTGGCCTCTATTATTCTTTCTCTCCTCTGTCTCTCTTGTTTGGCTGCATT
CCCTCTCGTCCGCCATCTTCATCATAATGTCTTTGAAAGGTTTCACAGGTTTGCTGGATGGACAGCTCTAGCTCTCCTCTGGGCCTTCATCATTCTCACT
ATCTCGTATGACCCCAAAACCAAATCCTATAGTAATGAACTAGGCTCCAGGATGATCAAACAACAAGAGTTTTGGTTCACAGTAGCAATTACAGTTCTAA
TTATCATCCCATGGATAACAGTGAGACGAGTTCCTGTCAAAGTATCTGCTGCTTCTGGTCATGCCTCAATCATAAAATTTGAGGGAGGTGTAAAAGCTGG
TATATTGGGAAGGATTAGCCCATCCCCATTATCCGAATGGCATGCTTTCGGTATCATTTCTGATGGGAAAACAGAGCATATGATGCTTGCTGGTGCTGTT
GGTGACTTCACCAAGTCCTTGGTCTCAAACCCACCGAGCCATTTGTGGGTTAGGCAAGTGCACTTTGCTGGTTTGCCTTACCTGGTGAATTTGTATGACA
GGGTTCTTTTAGTGGCGACAGGTTCTGGCATCTGTGTTTTCTTGTCATTCCTTTTGCAGCCATGTCGAGCCAGCGTATGTGTACTTTGGGTGGCCAAAGG
GATTGAACAAAACTTTGGCAAAGAAATTCAAGAGATGATGAGCGGACATCCTAAAGACAAAGTGATTGTGCATGATACAGCTGTGCTCGGTCGGCCCAAT
GTGTCCGAAATGAGTGTTGATGCTGCTAAAAATTGGAGAGCAGAAGTAGTCATTGTTACTAGCAATCCAGAAGGAAGCAGAGATGTCGTTAATTCTTGCA
AAGCAGCAGGGATTGCAGCCTTCGGTCCTATTTGGGACTCTTAG
AA sequence
>Potri.004G054500.2 pacid=42794420 polypeptide=Potri.004G054500.2.p locus=Potri.004G054500 ID=Potri.004G054500.2.v4.1 annot-version=v4.1
MQSPVRFSSCRGVSFEIKPRENPFAISAPSNDEAGGSTRIWLPWTLGSSSKVFPSIYSSSSRPSSHFCDLDLDGEDDQDDISLAVLEEGKVEENEQKLAP
FPSATKLEQPSKPARKQESRLSVILLDQGLFTVYKRLFVVCLTLNITGLVLAATGKFPYARNRAALFSIANILALTLCRSEAFLRVVFWIAVKVIGRSWI
PLPIKTATTSLLQSLGGIHSSCGISSVAWLIYALVLTLKNRENTSPEIVGVASIILSLLCLSCLAAFPLVRHLHHNVFERFHRFAGWTALALLWAFIILT
ISYDPKTKSYSNELGSRMIKQQEFWFTVAITVLIIIPWITVRRVPVKVSAASGHASIIKFEGGVKAGILGRISPSPLSEWHAFGIISDGKTEHMMLAGAV
GDFTKSLVSNPPSHLWVRQVHFAGLPYLVNLYDRVLLVATGSGICVFLSFLLQPCRASVCVLWVAKGIEQNFGKEIQEMMSGHPKDKVIVHDTAVLGRPN
VSEMSVDAAKNWRAEVVIVTSNPEGSRDVVNSCKAAGIAAFGPIWDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18540 unknown protein Potri.004G054500
[exp]
0 1
AT3G29670 PMAT2 phenolic glucoside malonyltran... Potri.004G096300
[exp]
11.70 0.9194
AT2G34620 Mitochondrial transcription te... Potri.011G081400
[exp]
21.16 0.9030
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G096425
[exp]
25.57 0.9035
AT3G06430 AtPPR2, EMB2750 pentatricopeptide repeat 2, em... Potri.008G098700
[exp]
34.75 0.8962
AT3G29670 PMAT2 phenolic glucoside malonyltran... Potri.004G096132
[exp]
35.56 0.9024
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Potri.014G096800
[exp]
35.59 0.8975
AT1G55370 NDF5 NDH-dependent cyclic electron ... Potri.019G034000
[exp]
39.68 0.8942
AT3G06430 AtPPR2, EMB2750 pentatricopeptide repeat 2, em... Potri.010G153900
[exp]
41.78 0.8992
AT5G54850 unknown protein Potri.011G136600
[exp]
44.27 0.8643
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.006G027300
[exp]
51.37 0.8899 Pt-AT103.2

Potri.004G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.