Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 517 / 0 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 430 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 422 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 327 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 310 / 4e-101 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 297 / 4e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 296 / 6e-96 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 265 / 6e-84 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 203 / 2e-60 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 198 / 9e-59 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064400 [exp] 686 / 0 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 387 / 2e-133 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 374 / 5e-128 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 371 / 2e-126 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 352 / 3e-119 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 318 / 1e-104 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 311 / 4e-102 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 311 / 6e-102 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G057900 [exp] 252 / 1e-78 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013932 [exp] 508 / 0 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 473 / 9e-167 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 433 / 1e-152 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 386 / 7e-133 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 370 / 9e-127 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 353 / 2e-119 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 320 / 2e-106 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10033619 [exp] 272 / 3e-90 AT4G18550 235 / 1e-75 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 252 / 5e-80 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 251 / 2e-79 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.004G054800.1 pacid=42795666 polypeptide=Potri.004G054800.1.p locus=Potri.004G054800 ID=Potri.004G054800.1.v4.1 annot-version=v4.1 ATGGTGGGTAGCATAGCAAAAGGATGGAAACATCTAAGTGGAGAAAATAATTGGAAGGACCTCCTGGACCCTCTTGATAACGATCTCCGGCACTACATCA TTCATTACGGGGAAATGGCTCAGGCTACATATGACAGTTTCAACACACAGAAGGTATCTAAGTATGCAGGAAGCAGCCTGTATGCGAAGGATGAATTTTT TAACAGGGTTCATTTAGAGAAAGGCAATCCATTCAAGTACCGTGTGACCAAATTCTTGTATGCAACCTCACAGATGCATATCTCTGAAGCATTCATCATA AAGTCATTATCCAGGGAAGCATGGAGCAAAGAATCCAACTGGATAGGATTCGTTGCGGTGTCTACCGATGAAGGGAAGGTCGCTTTAGGGCGGAGAGATA TTGTCATTGCTTGGAGAGGAACGATACAGATCTTAGAGTGGGTTAACGATTTTGAATTTAATTTAGTCTCTGCTTCTAAAATACTTGGCGAGTCCGGTAA CCCTAAGGTGCACCAGGGTTGGTACTCAATCTACACTTCTGATGATTCGCGCTCACCATACAACAAGAATAGTGCTAGAGACCAGGTTCTTAATGAGGTA GGGAGACTTGTGGATCAATTCAAAAATGAAGAAATCAGCATAACCATAACCGGCCACAGCTTAGGAGCTGCACTTGCTACATTGAATGCAGTGGATATAG TTGCTAATGGATTTAACAAGTCCCATGAAAACAAAGGTTGTCCTGTTACAGCCATGCTCTTTGCCAGTCCTCGTGTTGGGGACTCAAACTTTAAGAAGGT TTTCTCCAGATACATGGATCTTAAAGCATTACGCGTCCATAACGTTCTAGATGTTGTTCCTAAGTATCCATTTATAGGCTATGCGGATGTGGGAGAAGAA TTGATAATTGACACCACCAAATCTAAGTACCTGAAGAGCCCTGGAAATGTATCAAGTTGGCATAACTTGGAGGCTTACCTGCATGGAGTGGCTGGAACAC AAGGGTCCAAAGGAGGGTTTGAATTAGTGGTCAATCGCGATATTGCTCTTATTAACAAAACTACTGATGGTTTAAAGGATGAATATCTTGTACCAGCATC ATGGCGGATTCAAGAAAACAAGGGTATGGTGCAGCAAGCAGATGGTTCTTGGAAGTTGGTGGATCATGAAGAAGATGTTGATACCTGA
AA sequence Show only first row Show all	>Potri.004G054800.1 pacid=42795666 polypeptide=Potri.004G054800.1.p locus=Potri.004G054800 ID=Potri.004G054800.1.v4.1 annot-version=v4.1 MVGSIAKGWKHLSGENNWKDLLDPLDNDLRHYIIHYGEMAQATYDSFNTQKVSKYAGSSLYAKDEFFNRVHLEKGNPFKYRVTKFLYATSQMHISEAFII KSLSREAWSKESNWIGFVAVSTDEGKVALGRRDIVIAWRGTIQILEWVNDFEFNLVSASKILGESGNPKVHQGWYSIYTSDDSRSPYNKNSARDQVLNEV GRLVDQFKNEEISITITGHSLGAALATLNAVDIVANGFNKSHENKGCPVTAMLFASPRVGDSNFKKVFSRYMDLKALRVHNVLDVVPKYPFIGYADVGEE LIIDTTKSKYLKSPGNVSSWHNLEAYLHGVAGTQGSKGGFELVVNRDIALINKTTDGLKDEYLVPASWRIQENKGMVQQADGSWKLVDHEEDVDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054800 [exp]	0	1
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G107200 [exp]	4.69	0.9002
AT1G20070			unknown protein		Potri.005G241800 [exp]	16.00	0.8690
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	17.49	0.8613
					Potri.008G182733 [exp]	18.22	0.7889
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209900 [exp]	24.33	0.8595
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.006G081200 [exp]	25.76	0.8636
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	27.22	0.8687
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	29.69	0.8464
AT5G37010			unknown protein		Potri.015G147900 [exp]	38.30	0.8588
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.008G211300 [exp]	39.79	0.7967

Compare expression of checked genes

Potri.004G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.