Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 315 / 1e-96 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 258 / 4e-80 unknown protein AT1G48280 240 / 1e-71 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 59 / 6e-09 unknown protein AT1G61080 44 / 0.0003 Hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064500 [exp] 469 / 4e-159 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 325 / 2e-101 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 325 / 5e-101 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 323 / 5e-99 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 301 / 3e-96 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 300 / 1e-95 AT1G07120 434 / 4e-151 unknown protein Potri.010G003100 [exp] 266 / 2e-81 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 69 / 6e-12 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 66 / 4e-11 AT4G04980 387 / 4e-121 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015292 [exp] 427 / 2e-142 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000986 [exp] 424 / 8e-142 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 421 / 4e-140 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013931 [exp] 337 / 2e-108 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 308 / 5e-93 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 306 / 1e-92 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 275 / 2e-86 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 175 / 2e-49 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 72 / 6e-13 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 69 / 5e-12 AT4G04980 347 / 1e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G054900.1 pacid=42795226 polypeptide=Potri.004G054900.1.p locus=Potri.004G054900 ID=Potri.004G054900.1.v4.1 annot-version=v4.1 ATGGTAGCTGGTAAGGTAAGGCTGGCAATGGGTTTGCAAAAATCACCTGCAAACAAAACTGAAACTCATAATAATACACCACCACCAAAACCACCGATTC CTTCTCCTAGCTCCGGCAAAGTATCCTCTCAAAAGGCGGTTTTTTCACGCTCTTTCGGTGTTTACTTCCCTCGCTCCTCCGCTCAAGTCCAACCTCGTCC GCCTGACGTAACCGAGCTTTTAAAACTCGTTGAAGAGCTTCGTGAGCGTGAGTCTCTCTTAAAGACTGAACTTCTTGAATTTAAACTGTTAAAAGAGAGT GTGGCTATTGTTCCAGTTTTGGAAACTGTGATTTCTAATAAAAATATGGAGATTGAGAAGGCAGTGAAGGAGGTAGAATCACTAGAGCGTGAAAACGAGA GCTTAAAAGCCGAATTGAGTGAAGTGAGATTGAGATTCGGAGAGGAGAGAAAAGAGGGTGCAAAGAAAGTTAAGGAATTAGAAGCGGAAGTTGTAGAGCT GAAGAAAGCGGTGTCAGATCGTGAGAATGAAATAGAGCTCTCTTCTTCACAGAGGTTTCAAGGGTTAATGGAGGCCACAACCAAGTCTACTTTGATTAAA AGCTTGAAGAAAGGAGTCAAATGTACCGACATTATGAGTTCATCGAGCCAGAATCAAAATGTAGATCATCATTCTAAGAGATTGGAAGAGAATGTCGAAA CCGAGAAGCTGAGGCATTCGAGGTGTAACTCGGAGGAACTCACTGAGTCAACTCTGTCATCTCGAGTTCCTAGGGTCCCTAAACCACCACCAAAACGATC ATTGTCATCGCTGGCGACATCATCATCGTCAGTTTCATCCAGCGGCTCTGATCACTCAGTTTCATGTCCACCTGCTCCTCATCCGCCACCACCTCCTCCA CCTCCGGTGGCTAAGAAGGTTGGTCCACCTCCGCCGCCACCGCCACCGCCACCAAAGGGGAAGAGAGCAGGGACGGAGAAAGTGAGGAGAGTTCCGGAGG TGGCGGAGTTTTATCACTCGTTAATGCGGAGGGACTCGCGGCGGGATTCCGGCGGTGGAGTAGCGGAGGCCTTACCGGTAACGGCTAATGCCCGTGATAT GATTGGGGAGATAGAGAATAGGTCGACTCATTTGTTAGCGATAAAAACAGATGTGGAAATACAAGGAGACTTTATCAAGTTCTTGATAAAAGAGGTTGAG ATTGCTGCATTTACAGACATCGAAGACGTGGTCCCTTTTGTTAAATGGCTCGACGATGAGCTATCTTATCTGGTTGATGAAAGAGCAGTGCTTAAACACT TTGATTGGCCGGAGCAGAAGGCAGATGCATTACGCGAGGCTGCCTTTGGCTACTATGATCTCAAGAAGCTAGAATCGGAAGCCTCGCTGTTTCGAGACAA TCCCCGGCAGCCATGCGGTCCTGCTCTCAAGAAAATGCAGGCGTTGCTTGAAAAATTGGAGCATGGTGTTTACAATCTATCAAGAATGAGAGAATCAGCA ACCATGAGATACAGAGGATTTCAAATTCCAACGGATTGGATGCTTGAAACAGGAATAGTTAGTCAGATTCAGTTGGCATCTGTGAAATTAGCGATGAAGT TCTTGAAGAGGGTATCTTCAGAACTTGAGACTGTTGGCGGGGGGCCCGAAGAAGAGGAGCTGATAGTCCAAGGCGTTCGATATGCATTCCGGGTACATCA GTTTGCTGGAGGTTTCGATGCGGAAACAATGAGGGCATTCCGAGAATTGAGAGATAAAGCCAGATCATGTCATGTACAATGTCAAAACCAGCAGCAACAG AAACTTGTATGCGGGTCTACACCTTGCTAA
AA sequence Show only first row Show all	>Potri.004G054900.1 pacid=42795226 polypeptide=Potri.004G054900.1.p locus=Potri.004G054900 ID=Potri.004G054900.1.v4.1 annot-version=v4.1 MVAGKVRLAMGLQKSPANKTETHNNTPPPKPPIPSPSSGKVSSQKAVFSRSFGVYFPRSSAQVQPRPPDVTELLKLVEELRERESLLKTELLEFKLLKES VAIVPVLETVISNKNMEIEKAVKEVESLERENESLKAELSEVRLRFGEERKEGAKKVKELEAEVVELKKAVSDRENEIELSSSQRFQGLMEATTKSTLIK SLKKGVKCTDIMSSSSQNQNVDHHSKRLEENVETEKLRHSRCNSEELTESTLSSRVPRVPKPPPKRSLSSLATSSSSVSSSGSDHSVSCPPAPHPPPPPP PPVAKKVGPPPPPPPPPPKGKRAGTEKVRRVPEVAEFYHSLMRRDSRRDSGGGVAEALPVTANARDMIGEIENRSTHLLAIKTDVEIQGDFIKFLIKEVE IAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYYDLKKLESEASLFRDNPRQPCGPALKKMQALLEKLEHGVYNLSRMRESA TMRYRGFQIPTDWMLETGIVSQIQLASVKLAMKFLKRVSSELETVGGGPEEEELIVQGVRYAFRVHQFAGGFDAETMRAFRELRDKARSCHVQCQNQQQQ KLVCGSTPC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	4.89	0.8356
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	5.29	0.7875
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	6.00	0.8054	Pt-BIO2.2
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	6.32	0.7952
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	7.34	0.8008
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	10.19	0.8004
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.010G167200 [exp]	12.40	0.7693	EXPA1.1,PtEXPA3
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	13.26	0.7670	Pt-SMO2.2
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	15.09	0.7715
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.001G415600 [exp]	15.81	0.7199

Compare expression of checked genes

Potri.004G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.