Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 524 / 0 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 519 / 0 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 419 / 8e-147 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 415 / 3e-145 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G14850 378 / 7e-131 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 373 / 7e-129 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 367 / 2e-126 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 333 / 1e-112 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 317 / 4e-106 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G06700 286 / 2e-91 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064700 [exp] 652 / 0 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 456 / 2e-161 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.013G118500 [exp] 445 / 4e-157 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106200 [exp] 424 / 1e-148 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 407 / 4e-142 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 399 / 5e-139 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 395 / 2e-137 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 387 / 1e-134 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.001G278300 [exp] 371 / 2e-127 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000988 [exp] 523 / 0 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 520 / 0 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 513 / 0 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10033617 [exp] 432 / 4e-152 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 430 / 5e-151 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10039559 [exp] 360 / 1e-123 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 343 / 3e-116 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 340 / 2e-115 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 339 / 1e-114 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10019774 [exp] 335 / 2e-113 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.004G055000.2 pacid=42794989 polypeptide=Potri.004G055000.2.p locus=Potri.004G055000 ID=Potri.004G055000.2.v4.1 annot-version=v4.1 ATGGGTTTTAAGTGCCGAGTTTTGTTTTCCATTTTTTGTCAATGTATGCTTTTGCTTTTGCAAGAAGCCATAGCTGGACAGCACTACTACAATGTTAGCA GGTTGAAGGGGAGAAAGCAAGTGAGTGGTTGTGATTTGTTTCAAGGGAGATGGGTGGTTGACAGTTCTTATCCTCTCTATGATTCCTCTGGCTGTCCATT CATTGATGCTGAGTTTGATTGCCAAGGGTATGGCAGACCTGATACTCAGTATCTCAAATACTCCTGGCAACCCGATTCTTGCAATATACCAAGGTTTAGC GGTGCAGATTTTTTGGCTAGGTGGAGAGGGAAGAAGATAATGTTCGTGGGGGACTCGCTGAGTCTGAATATGTGGGAATCATTAGCATGCATGATTCATG CTGCCGTGCCCACTGCCAAGACAACTTTTTCAAAGCGGAACTCCGTGACCTTCGTTGACTACGGTTTAACGTTGTACATGTATCGTACACCATACTTGGT AGATATTGTTCGAGAAAATGTTGGCGATGTGTTAAACCTAAACTCCATAGAGGCTGGCAATGCATGGAAAGGGATGGACATGCTCGTCTTCAATTCCTGG CACTGGTGGCTTCACACTGGAAAGTCCCAAGGATGGGACTACATCCGGGATGGACCAGCATTGTACAAAAACATGGACCGCTTAGAAGCGTTCAATAAAG GATTAACCACATGGGCCAGATGGGTTGACCAAAATGTTGATCCTTCTAAAACTAAAGTCTTCTTTCAGGGGATTTCGCCCACACATTATCAGGGCAAGGA CTGGAATCAGCCACAAAAGAGTTGTTCTGGAGAAGCAGTGCCCCTATCGGGGTCTACATATCCGGCAGGTGCACCTCCGGCGGTTGGTGTTGTAAGCAAA GTGTTGAGCTCAATTACGAAACCAGTTTATCTACTTGACATAACAACACTATCACAATTAAGAAAAGATGCTCATCCCTCAACTTATAGTGATGGATCTG GCACAGATTGCAGTCATTGGTGCCTGCCTGGATTGCCTGATACTTGGAACCAACTCTTATATGCGGCCCTCATCATGTGA
AA sequence Show only first row Show all	>Potri.004G055000.2 pacid=42794989 polypeptide=Potri.004G055000.2.p locus=Potri.004G055000 ID=Potri.004G055000.2.v4.1 annot-version=v4.1 MGFKCRVLFSIFCQCMLLLLQEAIAGQHYYNVSRLKGRKQVSGCDLFQGRWVVDSSYPLYDSSGCPFIDAEFDCQGYGRPDTQYLKYSWQPDSCNIPRFS GADFLARWRGKKIMFVGDSLSLNMWESLACMIHAAVPTAKTTFSKRNSVTFVDYGLTLYMYRTPYLVDIVRENVGDVLNLNSIEAGNAWKGMDMLVFNSW HWWLHTGKSQGWDYIRDGPALYKNMDRLEAFNKGLTTWARWVDQNVDPSKTKVFFQGISPTHYQGKDWNQPQKSCSGEAVPLSGSTYPAGAPPAVGVVSK VLSSITKPVYLLDITTLSQLRKDAHPSTYSDGSGTDCSHWCLPGLPDTWNQLLYAALIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.004G055000 [exp]	0	1
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213400 [exp]	3.00	0.7995
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	3.16	0.7774
AT1G64850			Calcium-binding EF hand family...		Potri.013G072600 [exp]	9.79	0.7700
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	10.72	0.7537
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.003G201700 [exp]	13.71	0.7679
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	18.33	0.7426
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.008G186100 [exp]	30.59	0.6539
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Potri.001G366100 [exp]	30.75	0.7011	ZIP11.2
AT3G15140			Polynucleotidyl transferase, r...		Potri.003G194300 [exp]	30.88	0.6659
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	35.51	0.7144	MHK.1

Compare expression of checked genes

Potri.004G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.