Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP79.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 590 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 581 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 551 / 0 CYP79A2 cytochrome p450 79a2 (.1) AT5G35917 472 / 4e-163 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G58260 450 / 7e-154 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G79370 410 / 5e-138 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16410 382 / 3e-127 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G16400 376 / 5e-125 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G01280 267 / 4e-83 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 226 / 2e-67 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157200 [exp] 764 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 737 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 255 / 2e-78 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.007G084700 [exp] 238 / 3e-72 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 236 / 1e-71 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.018G051300 [exp] 234 / 1e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 234 / 2e-70 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 234 / 4e-70 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 226 / 1e-67 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023144 [exp] 583 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 560 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 552 / 0 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 544 / 0 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 530 / 0 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 510 / 2e-177 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023142 [exp] 330 / 3e-110 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 302 / 2e-98 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10012624 [exp] 268 / 2e-83 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Lus10017742 [exp] 239 / 4e-72 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G055200.1 pacid=42793830 polypeptide=Potri.004G055200.1.p locus=Potri.004G055200 ID=Potri.004G055200.1.v4.1 annot-version=v4.1 ATGGACTATTTTCCATCCACTAGCTCATTCATAATCTTATTGAGCTTCCCAATTCTTTTTCTTGTCTTAGCGATCACCTTATTTTCCTTTATCCAGTCCT CCAAGAATGTCAAGCAATACTCACTGCCTCCTGGTCCAAGACCATGGCCTCTTGTTGGATCCCTCCCGACAATGCTCCGAAACAAGCCAGTGTACCAATG GATACACAATCTCATGAAAGAAATGAACACTGAAATAGCTTGTATCCGTCTAGGAAACATCCATGTGATTCCTGTCACCTGTCCTAATATTGCTTGTGAA TTCTTGAAAGAACAAGATGATGTATTTTCATCTAGACCCGAAACCATATCCTCTTATCTCGCATCAAATGGGTACCTAGCGACAGTTGTATCACCATTTG GAGATCAGTGGAAGAAAATGAAGTCAGTCATGGCAACACAAGTGCTTTCTCCTACAAGGCATCAATGGCTTCACAAAAAAAGAGTTGAAGAAGGTGATAA CCTTGTTCGTCTTGTTTATAAACAATGTCAGGAATCTGATCAAGATGGCATAGTGAATTTGCGATTCACATCACAGCATTATTGTGCAAATGTTATTAGG AAGCTGATGTTCAACAAAAGATATTTTGGAGTGGGAATGGAGAATGGTGGACCTGGTTTTGAAGAGGAGCAGCATGTGGATGCACTCTTCACTATCCTCA GTCATTTATTTTCATTTTGTGTCTCAGATTTTTTGTCATTCTTGACATGGCTTGACCTAGATGGTCATGAGAAGGTGATGAAGGAGAAAGATAAGATCAT CAAAAAGTATCATGATCCCATAATTGACGACAGGATTCAACAATGGAAGGATGGAAAAAAGAAAGACATTGAGGACTTGCTTGATGTTTTAATAACCTTA AAGGATGACAATGGCAATCCTTTATTGTCAAAGGATGAGATAAAAGCTCAAGTGGAAGACATAATCTTAGCAGCAGTGGACAATCCATCAAATGCTTGTG AATGGGCATTTGCAGAGATGTTAAACAACCCTGAGATACTCGAAACAGCTGTTGAAGAATTGGATAGAGTGGTTGGGAAGCAACGACTGGTCCAAGAATC AGATTTTGCACAACTCAATTACGTCAAGGCCTGCGCTAGAGAAGCCTTTCGGCTGCATCCTGTTGCACCATTTAACGTTCCTCACGTATCCATGGCTGAT ACAGTAGTTGCCAAGCACTTCATCCCAAAAGGTAGTTATGTTATTCTTAGCAGATTAGGGCTCGGTCGAAACCCTAAAGTTTGGGACGAGCCACTAGAAT TCAAACCAGAGCGTCATCTCAAAGGAACAGGGAATGTTGTGTTGGCTGAGAATGGATTAAGATTCATTTCATTCAGCACAGGAAAGCGTGGGTGCATGGC TGTGACCCTTGGGAGTTCGATGACGAACATGCTATTTGCTAGGCTTCTTCATGGTTTTAGTTGGAGTTTGCCATCAAATGAGTCCAGCATTGACCTTTCC ACCGCAAAAGATAGCATGGCTCTCGCTAAACCACTGCTTGCTGTTGCGAAACCACGCTTGCCTGCACATTTGTACCCTAAATAA
AA sequence Show only first row Show all	>Potri.004G055200.1 pacid=42793830 polypeptide=Potri.004G055200.1.p locus=Potri.004G055200 ID=Potri.004G055200.1.v4.1 annot-version=v4.1 MDYFPSTSSFIILLSFPILFLVLAITLFSFIQSSKNVKQYSLPPGPRPWPLVGSLPTMLRNKPVYQWIHNLMKEMNTEIACIRLGNIHVIPVTCPNIACE FLKEQDDVFSSRPETISSYLASNGYLATVVSPFGDQWKKMKSVMATQVLSPTRHQWLHKKRVEEGDNLVRLVYKQCQESDQDGIVNLRFTSQHYCANVIR KLMFNKRYFGVGMENGGPGFEEEQHVDALFTILSHLFSFCVSDFLSFLTWLDLDGHEKVMKEKDKIIKKYHDPIIDDRIQQWKDGKKKDIEDLLDVLITL KDDNGNPLLSKDEIKAQVEDIILAAVDNPSNACEWAFAEMLNNPEILETAVEELDRVVGKQRLVQESDFAQLNYVKACAREAFRLHPVAPFNVPHVSMAD TVVAKHFIPKGSYVILSRLGLGRNPKVWDEPLEFKPERHLKGTGNVVLAENGLRFISFSTGKRGCMAVTLGSSMTNMLFARLLHGFSWSLPSNESSIDLS TAKDSMALAKPLLAVAKPRLPAHLYPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.004G055200 [exp]	0	1	Pt-CYP79.1
					Potri.005G167800 [exp]	8.77	0.7463
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	14.83	0.6772
					Potri.002G216266 [exp]	17.66	0.5923
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	22.64	0.7283
					Potri.002G131650 [exp]	28.00	0.6943
AT5G04700			Ankyrin repeat family protein ...		Potri.002G048666 [exp]	34.78	0.7059
AT1G43760			DNAse I-like superfamily prote...		Potri.005G151350 [exp]	35.00	0.6462
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	37.10	0.6836
					Potri.014G039333 [exp]	44.21	0.6636
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Potri.001G365700 [exp]	60.44	0.6207

Compare expression of checked genes

Potri.004G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.