Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 67 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065100 [exp] 438 / 8e-156 AT2G31130 63 / 8e-11 unknown protein Potri.019G089900 [exp] 56 / 1e-08 AT2G31130 84 / 1e-17 unknown protein Potri.001G376800 [exp] 56 / 2e-08 AT1G17780 82 / 3e-17 unknown protein Potri.013G118000 [exp] 52 / 2e-07 AT2G31130 85 / 8e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013926 [exp] 69 / 4e-13 AT2G31130 68 / 1e-12 unknown protein Lus10000990 [exp] 66 / 5e-12 AT2G31130 70 / 3e-13 unknown protein Lus10017672 [exp] 56 / 2e-08 AT2G31130 100 / 4e-23 unknown protein Lus10033615 [exp] 54 / 8e-08 AT2G31130 101 / 2e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G055300.6 pacid=42796314 polypeptide=Potri.004G055300.6.p locus=Potri.004G055300 ID=Potri.004G055300.6.v4.1 annot-version=v4.1 ATGGCCTGGATGCAGAATATGTACAAGAAATTCGAAGCTATGTGTTTGGAGTTGGATGATATCTTGGAGCAGGAAGGGTTGAAATATGCCGACCACTTGC AGAAAGTAGGTGCCAATGTCAAGCAATTTTGCTCAGATATTGTGCGAGATGTGCAGCCTCAGCCGTCTGAGGATACTGTGGATGGCGTAGCTAGCGTCTC TTGTCTAGTGAAAAACACCGAGTCAGATAAAATGTCAAAGGAAGGCATTGTCCAAAACCATTTTGATATGGAACCTTGCAACGTGAGTCGTTTGCTCTAC TCATGTTCTGTTGAACTTATCAAGGCCACAAAGAATGATCTGTCTTTGGAGGAAATGGTTGTTGCTGAGATATATGAAAAATCAGTGTCAAGTCTTAAGG AAAATCGTTCCGAGGAGAAGCAAGTTCAGCTTGAGACATTGGATACCCCAGAAGAGAAAGATCTAAGCAATTCAGTATTATCCTCAACATCTTATGATCT ACTAGAAAGTAACTCTTTAACAGAGGTAATTCCAATAGATGGGCTATCTTCAAAATCTGTTAATTTGGTTGACTCGTATGAAAGCAAGGTTCCAGAGTTG GGATTTACTTCTAGCGAGGCCTCAGCTGAATCAATCAGACAGATAGACAACTCCACTGAAGATGCTACCAATCCGGGATCATCTTCTTCAGTGAAGCTTG ATGGGAGTTGCTTTGTTACAGATTGCAATGAGCTTTCTTCTGTTTCATATGAAGCAGGACAACTAGGGTCTTCCAAGGAAACCTTGGATAATGTTTCGTT CAAAAAAAGGAAGGCAGCGAATCAGGTTTTCAATCAGGAACCAGCTTTTGATCCAAACCCCAGTCAACAGAAAGAAAGTTTTGCATCAACTGTTAATACC AGACCAGATCACGATCCCTGCGATTCCGACTGGGTGATTGTCTAG
AA sequence Show only first row Show all	>Potri.004G055300.6 pacid=42796314 polypeptide=Potri.004G055300.6.p locus=Potri.004G055300 ID=Potri.004G055300.6.v4.1 annot-version=v4.1 MAWMQNMYKKFEAMCLELDDILEQEGLKYADHLQKVGANVKQFCSDIVRDVQPQPSEDTVDGVASVSCLVKNTESDKMSKEGIVQNHFDMEPCNVSRLLY SCSVELIKATKNDLSLEEMVVAEIYEKSVSSLKENRSEEKQVQLETLDTPEEKDLSNSVLSSTSYDLLESNSLTEVIPIDGLSSKSVNLVDSYESKVPEL GFTSSEASAESIRQIDNSTEDATNPGSSSSVKLDGSCFVTDCNELSSVSYEAGQLGSSKETLDNVSFKKRKAANQVFNQEPAFDPNPSQQKESFASTVNT RPDHDPCDSDWVIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31130			unknown protein		Potri.004G055300 [exp]	0	1
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.014G100200 [exp]	1.41	0.8894
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	2.23	0.8835
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	3.46	0.8831
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	4.00	0.8868
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.001G101500 [exp]	5.47	0.8884
AT2G35790			unknown protein		Potri.008G042800 [exp]	6.32	0.8755
AT5G17600			RING/U-box superfamily protein...		Potri.006G144200 [exp]	7.34	0.8423
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.005G004600 [exp]	7.74	0.8708
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	8.48	0.8574
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	9.48	0.8543

Compare expression of checked genes

Potri.004G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.