Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27430 476 / 4e-167 ARM repeat superfamily protein (.1) AT4G31890 167 / 4e-46 ARM repeat superfamily protein (.1.2) AT2G25130 154 / 6e-42 ARM repeat superfamily protein (.1) AT1G67530 100 / 3e-22 ARM repeat superfamily protein (.1.2) AT1G27910 92 / 1e-19 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G24330 82 / 2e-16 ARM repeat superfamily protein (.1) AT3G54790 81 / 3e-16 ARM repeat superfamily protein (.1.2) AT4G12710 74 / 2e-14 ARM repeat superfamily protein (.1) AT5G67340 67 / 1e-11 ARM repeat superfamily protein (.1) AT4G16490 59 / 3e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065300 [exp] 708 / 0 AT2G27430 449 / 2e-156 ARM repeat superfamily protein (.1) Potri.006G263100 [exp] 166 / 1e-45 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G058000 [exp] 91 / 3e-19 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 85 / 7e-18 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 84 / 5e-17 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 83 / 1e-16 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.008G177100 [exp] 76 / 2e-14 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 70 / 5e-13 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 64 / 1e-10 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001881 [exp] 465 / 3e-162 AT2G27430 410 / 7e-141 ARM repeat superfamily protein (.1) Lus10013918 [exp] 368 / 5e-126 AT2G27430 337 / 4e-114 ARM repeat superfamily protein (.1) Lus10041017 [exp] 184 / 1e-52 AT4G31890 621 / 0.0 ARM repeat superfamily protein (.1.2) Lus10013459 [exp] 182 / 7e-50 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10039047 [exp] 82 / 1e-16 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 77 / 7e-15 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10006427 [exp] 76 / 2e-14 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 73 / 2e-13 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10036415 [exp] 72 / 3e-13 AT2G04280 828 / 0.0 unknown protein Lus10041090 [exp] 69 / 1e-12 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G055500.1 pacid=42796220 polypeptide=Potri.004G055500.1.p locus=Potri.004G055500 ID=Potri.004G055500.1.v4.1 annot-version=v4.1 ATGTCTCCAGCACAAAGACCAAACATGCCTGAACCACCTCCTTCCCCTTCTTCCTCTTCTATCTTTGCACTTTCTTACTTGAAACTTCAATTCTTCGCTC GTGTCAGGCGGTTCTTGCAAACTAAAAGGGCACAAAAGAGCAATAAAACAAGAACCAAAGCTATGGTCAACAAAGAAGAACAAGCAACAATTACTACTGT GGATAGACAAAGTAGTGATATTGATGATGATTCTGTGGTGTTACAAAGATCAGTAAAGAGACTTCACTTTGGAAGCTGGGAAGAGAAGGAGATGGCAGCT CTTGAGATTAAAAAATTAGCTAGGGAAGATGCTAAGATGAGAAATTTGATGGCTGAGCTTGGTGTTATTCCTGCCTTGGTGGGGATGGTGGCTTCAGAAG TAGCTGGCCGCCAGAGAGTGGCTGTTAATGCTTTGATTGAGCTTGCTAATGGAACTTACAAGAACAAGGCTCTCATGGTAGAAGCAGGGATCTTTTCGAA ACTACCAAAGAGCATGGATGTTTTAGAAGAACCAACAAGACAAGAATTTGCCGAATTAATCCTGTCATTATCTTCGCTGGCGAATCATACCCAATTCCCT CTCGCTTCATCAGAAGTTTTGCCATTTCTAATTGGAATTCTTGAGTCATGCTCAAGTTACGAAACCAAGGAGTCATGTTTGGGTACTCTATACAACCTGT CTGCTGTGTTGGACAATGCAGGGCCTTTGCTCTCTAATGGGGCAGTTCAAACTCTCTTGAGGGTAATATCAGAAAAAGAATTCTCAGAGAAAGCTCTAGC GACACTAGGACATTTAGTGGTGACCTTAATGGGGAAGAAAGCAATGGAAAATAGTTCACTTGTGCCAGAGAGCTTGATAGAGATAATGACATGGGAGGAT AAGCCAAAATGTCAAGAATTATCGGCTTATATTTTGATGATTCTAGCTCATCAAAGCTCAGCTCTGCGTGATAAAATGCTTAAATCTGGCATTGTCCCTG TACTCCTTGAAGTGGCATTATTGGGGAGTCCTCTAGCTCAGAAGAGAGCACTAAAACTACTGCAATGGTTCAAAGATGAGAGGCAAACAAGGATGGGGCC ACATTCTGGGCCTCAAACAGCAAGGATAGCAATAGGGTCACCAGTAAATAACAGGGAACCTCAAGAGGGAAAGAAACTGATGAAGGATTTGGTGAAGCAA AGTTTACACAAGAACATGGAGTTGATAACCCAGCGAGCCAATGCTACTTCAGGGGACTCTTCTAAGTTCAAGTCCTTGGTTATCAGTACAAGTTCTAAAA GCTTGCCTTGCTAA
AA sequence Show only first row Show all	>Potri.004G055500.1 pacid=42796220 polypeptide=Potri.004G055500.1.p locus=Potri.004G055500 ID=Potri.004G055500.1.v4.1 annot-version=v4.1 MSPAQRPNMPEPPPSPSSSSIFALSYLKLQFFARVRRFLQTKRAQKSNKTRTKAMVNKEEQATITTVDRQSSDIDDDSVVLQRSVKRLHFGSWEEKEMAA LEIKKLAREDAKMRNLMAELGVIPALVGMVASEVAGRQRVAVNALIELANGTYKNKALMVEAGIFSKLPKSMDVLEEPTRQEFAELILSLSSLANHTQFP LASSEVLPFLIGILESCSSYETKESCLGTLYNLSAVLDNAGPLLSNGAVQTLLRVISEKEFSEKALATLGHLVVTLMGKKAMENSSLVPESLIEIMTWED KPKCQELSAYILMILAHQSSALRDKMLKSGIVPVLLEVALLGSPLAQKRALKLLQWFKDERQTRMGPHSGPQTARIAIGSPVNNREPQEGKKLMKDLVKQ SLHKNMELITQRANATSGDSSKFKSLVISTSSKSLPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	0	1
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	1.00	0.9211
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	3.00	0.8784
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.007G008200 [exp]	3.46	0.8427
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	5.29	0.8825
					Potri.005G040650 [exp]	7.07	0.8655
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	8.77	0.8439
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	8.94	0.8773
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	9.48	0.8642
					Potri.002G155350 [exp]	12.36	0.8455
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	12.72	0.8326

Compare expression of checked genes

Potri.004G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.