Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APG7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45900 986 / 0 ATAPG7, ATG7, APG7, ATATG7 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) AT5G19180 50 / 5e-06 ECR1 E1 C-terminal related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065402 [exp] 179 / 4e-53 AT5G45900 123 / 8e-34 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) Potri.008G204000 [exp] 44 / 0.0003 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 44 / 0.0004 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015289 [exp] 1057 / 0 AT5G45900 978 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) Lus10025416 [exp] 1034 / 0 AT5G45900 969 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1) Lus10034043 [exp] 44 / 0.0003 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 44 / 0.0004 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF16420 [poplar] [flax] ATG7_N Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
Representative CDS sequence Show only first row Show all	>Potri.004G055600.3 pacid=42795854 polypeptide=Potri.004G055600.3.p locus=Potri.004G055600 ID=Potri.004G055600.3.v4.1 annot-version=v4.1 ATGGCTCAAGAGGAAAAGAGTAGGAGTGGATGTGGATCTTCATCTTCTACTATCCTCCAATTCGTACCCTTTAATAGCTTAGCTGACGAAGGTTTCTGGC ATAGATTGTCTTCTTTGAAGCTCAACAAATATGGCATCGATGATTCTCCTATACCCATCACCGGGTTTTATGCGCCTTGCTCACATTCTCAAGTATCCAA TCACCTGAGACTTCTCGCTGAATCTTTGCCGACTGATGAAAATGACCAGTCTTCAATGCCAGCAATTAGTCGCGGTAACAGGAACAGATGCCCTGTACCC GGGACTCTTTACAATACAAATACATTGGAGGCCTTCCATGCCCTGGATAAAAAGAGCTTGCTAAAGGAGGAAGCAAACAAGATTTGGGAAGACATTCATA ATGGGAGAGCAGTGGAGGACAGTGCGGTGCTTTCAAGGTTCCTTCTTATATCCTTCGCAGACCTAAAAAAATGGAGCTTTCATTACTGGTTTGCTTTCCC TGCCTTGGTGCTTGATCCTCCTGCGACATTGGTTGAATCAAAGCGTGCTTCAGAATGGTTCACCTCAGAAGAGGTAAAATCCGTATCTGTGGCTTGTAAT GACTGGCGTAACTCAAGCTTAACCGCAGATGTTCCATTCTTTTTTATCAGTATTGCTTCCAATTCCCATGCTACTATCAGGCATTTAAAGGATTGGGAAG CCTGCCAGGCTGATAATCAAAAGGTGCTATTTGGTTTTTATGACCCATGTCATGAAAAAGATCCTGGTTGGCCTCTTCGCAACTTCCTAGCACTGATTTC TTCAAGATGGAATCTGAAGAGTGTCCACTTTTTATGCTTCAGAGAGAGTCGTGGTTTTATGGATATGGAGTCTTCCCTTGTCATTGAAGCCTTAATAACA GCTCCACAAGGATTGAATGATCGTCAACTTGTACCTAATGCAGTTGGATGGGAAAAAAACAAAAATAAATACGTATACAGATGTATTAACCTTGCTACAT CCATGGACCCAACTAGGTTGGCCGTATCTGCTGCAGATTTGAATTTAAAACTAATGAGATGGCGTGCCTTGCCATCCCTTAACTTAGATGAGTTATCTTC TGTGAAGTGTCTTCTCATAGGAGCAGGCACGCTTGGATGCCAGGTTGCTCGCATGCTTATGGCTTGGGGTGTCCGAAAAATTACACTACTTGACAATGGA AGAGTGGCTATGTCTAATCCATTGAGGCAGTCCCTGTACACATTGGATGACTGCCTCGATGGAGGTGATTTTAAAGCCTTGGCAGCCGCTAAAAGCTTGA AGCGTATTTTTCCAGCTGTGGAAGCAAAGGGTGAAGTGATGGCTATACCAATGCCTGGTCATCCAGTGACTAACCAAGAAGAGAAGAGTGTGGTTGATGA TTGTAGCCGTCTGTATGATCTGGTTGATTCCCATGATGCAGTTTTCTTGTTGACTGATACAAGAGAGAGCCGATGGCTCCCAACCCTTCTATGTGCAAGT GCTAACAAGATTACTATAACTGCAGCTCTTGGGTTTGATAGCTTCTTGGTAATGCGGCATGGCCCTGGTCCTTTTAGCTCTGTTCATGCTAACACTTCAT CTGTTGATATGGAAAACCTTGCTCAAACTGACAAAGGAGGGAAGAGACTGGGCTGTTACTTCTGCAATGATGTGGTTGCACCTACAGATTCAACTGCCAA TCGAACTTTAGACCAACAGTGCACTGTTACACGTCCAGGGCTTGCTCCTATTGCTTCATCTCTTGCTGTAGAGCTTTTTGTCAGCATCTTGCATCATCCT GATGGGATGTTTGCTGAAGGTGATATCACAAACTCCACTAGTAGCAGTGGTGGCAGTGAGCCACCTCTTGGTATATTGCCCCACCAGATTCGGGGTTCTC TCTTTCATTTTTCGCAAATGACCCTTGTAGGCCACTCCTCTAATAGTTGCACTGCTTGTTGCAGCACTGTTGTATCAGAATATCGGAAAAAAGGAATCGA ATTCCTGCTTCAAGCAATTAATCATCCTACTTATTTGGAGGATCTCACCGGACTCACAGAATTGAAGGAGTCGGCTAACTCATTTAAATTGGACTGGGAT GATGAGACAGATGACTTCGATGATGATGATGATTGTGTTGAAATATAA
AA sequence Show only first row Show all	>Potri.004G055600.3 pacid=42795854 polypeptide=Potri.004G055600.3.p locus=Potri.004G055600 ID=Potri.004G055600.3.v4.1 annot-version=v4.1 MAQEEKSRSGCGSSSSTILQFVPFNSLADEGFWHRLSSLKLNKYGIDDSPIPITGFYAPCSHSQVSNHLRLLAESLPTDENDQSSMPAISRGNRNRCPVP GTLYNTNTLEAFHALDKKSLLKEEANKIWEDIHNGRAVEDSAVLSRFLLISFADLKKWSFHYWFAFPALVLDPPATLVESKRASEWFTSEEVKSVSVACN DWRNSSLTADVPFFFISIASNSHATIRHLKDWEACQADNQKVLFGFYDPCHEKDPGWPLRNFLALISSRWNLKSVHFLCFRESRGFMDMESSLVIEALIT APQGLNDRQLVPNAVGWEKNKNKYVYRCINLATSMDPTRLAVSAADLNLKLMRWRALPSLNLDELSSVKCLLIGAGTLGCQVARMLMAWGVRKITLLDNG RVAMSNPLRQSLYTLDDCLDGGDFKALAAAKSLKRIFPAVEAKGEVMAIPMPGHPVTNQEEKSVVDDCSRLYDLVDSHDAVFLLTDTRESRWLPTLLCAS ANKITITAALGFDSFLVMRHGPGPFSSVHANTSSVDMENLAQTDKGGKRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASSLAVELFVSILHHP DGMFAEGDITNSTSSSGGSEPPLGILPHQIRGSLFHFSQMTLVGHSSNSCTACCSTVVSEYRKKGIEFLLQAINHPTYLEDLTGLTELKESANSFKLDWD DETDDFDDDDDCVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Potri.004G055600 [exp]	0	1	APG7.1
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	2.44	0.5592
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	74.93	0.4714
AT2G45500			AAA-type ATPase family protein...		Potri.014G071900 [exp]	98.36	0.4979
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	154.84	0.4606
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.005G169100 [exp]	205.38	0.4386

Compare expression of checked genes

Potri.004G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.