Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29170 447 / 3e-139 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT2G34150 282 / 6e-81 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT4G18600 249 / 3e-67 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1) AT2G38440 197 / 5e-51 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 181 / 5e-46 ATSCAR4, WAVE3 SCAR family protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066100 [exp] 1569 / 0 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.016G129000 [exp] 194 / 5e-50 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.006G105800 [exp] 192 / 1e-49 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013904 [exp] 530 / 3e-168 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) Lus10001897 [exp] 380 / 2e-112 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10029437 [exp] 193 / 1e-49 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10022757 [exp] 172 / 5e-43 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G057100.11 pacid=42795755 polypeptide=Potri.004G057100.11.p locus=Potri.004G057100 ID=Potri.004G057100.11.v4.1 annot-version=v4.1 ATGCCTCTGGTTCGGTTTGAAGTGAGAAATGAGTACGGGTTAGGACAGGGTGAGCTTTATAGGGAAGCAAACAGTGAAGGAGATTCAAAAGCTGTGCTCG ATGGTGTTGCTGTTGCTGGCTTGGTTGGGATCTTGCGTCAATTAGGCGATCTTGCCGAATTTGCAGCAGAGGTTTTCCATGGCTTACAAGAGCGAGTGAT GAGTACAGCTTCTAGAAGTCATAAATTGATGGTTCGCGTGCAAAACATTGAAGCTGCGCTACCTCCTCTTGAAAAGGTGGTGCTTGCCCAAACAAGCCAC ATACATTTTGCTTACACACCTGGTTCTGAGTGGCATCCTTGTATTCAAAACGAACAAAATCATTTCATCTACAATGACCTGCCGCGATTCATTATGGACT CCTATGAAGAATGTCGCGATCCTCCACGTTTGCATTTGCTTGACAAATTTGATACTGGGGGGCCAGGGTCCTGTTTAAAGAGATATTCAGATCCGGCCTA CTTTAGGAGAGTATCTGGGAATGTCACGGGACCGGATGCTGAGAAACTCCCAAAAGATAAGAGAGCTCGGAAAAGCAAGAAAAAACATTCATCACCAAGG AATGGAGACGTGGCCCATTATGCATCAATGTCAAATCATAGTGGCAGGTATTGTATCTTTATGAAGGAAGCTAGTGCTGTCATGTTTAATTGGATGAAAT TAATGTGTACATGGTATTTGCTCTGTAGAATGCAGTTTACCACTCCAAATGGTAATGGGCAGACCTCTCCTTCTCATACAGCTTCTACAATTGACACGAC ATTAAAATCTGATGCGGGTGATCATTCAAATTCTTTTGATTCAAGAACCGGGTCAGGGTATATTGAATGTGTGTTCCATCTAAATTCCTCTGTGCAAGCT GAAGAAGAGGAACCTAAGGAATTGTCTTCAAGGTTCATGCAGCAGAATGATGTCCCTGATTCAGTTTTTCCTGATCGACAACCTGGGATGGCAGATAACA ATTTTCATCATACTTCATCACCAGAGCAGATTGCTGCCCCTATTTCATCTTGTGTTACTTGGGATGAAAAGGAAGAAATAGTGGAGCCTAGTGGTCAACA TTACGATGAAGATGAAATTTCAGAGGTGCTCGCAGCAGAGCCTGACCTAGATACACATGATAGATCAACTGTCAATCTTAAAAATCCTAATCCTCTGGAT ATTGTACTTGATGGTGCAAATACACCAAAATCAAGCTCTAGCAGGAGCCAGCTTGATGAGGTTGAAAGCGAGCCAGATGATTTCATGGATGCACTGAACA CCATAGAGTCAGAATCTGAAAATGACATCGATTGCCAAACAAAATGTGAAGTGGAGCAGTTTTCCTCCAGTGTTAACAATGAAGTTGAGGAGACAATACT CGAGGTAACATCACATATTTCAGACCATCATCCATCTGAATATGAATCTCGTACCTTATCTGTAATTTCCTCAAATGAAAAATCTCCCTGTGAGTTACCC AGCTCAGTTTCCTTGAAGAGTTTTGCCTATGAACAGGAATCTCATGTATCTGGAAATTCTTCTAAGCTGGACAGTTCACCAGGCATCGAATGTTCTAGAA GTGCTAATGTCCTAGATAATTCAAAAGTAGAATCTGTTAGTGATCCTCCTTCATCTTCTGTCTCTGCGACTTCAATTTCAAATGCAGAAGGGCCATTGAG TGATAAAATCATAAGTAGTTCCAACAAGTCTCAAGAATCTCAAAATGATTTTTCTAGTGTTCAGTCTACTACATTCTGGACAAATGGTGGCCTGTTAGGA CTTGAGCCTTCAAAGCCTCCAGATTTTGCTGTATCAAATGCTAAAAGTCCAGATTCTGTGACCAGAAGTAAAGATGAGACAGGGCTGCCTACAAATCACA CTTCCATGCCAATCAATGATGGAGGAAAACCTGGCAGATTGATCAAGGATGCAGGAAGCATCGAAAGCGCTCCAACTTCCAAAGGCTCCACATCATGGCA TGATGATCAAGATTCCAAAGTTGAAAAACCTGGTGATTTTCATCAAGGCAATAGAATTAGTCATGGCTATGAGGATGGACCAAATATTACCAGTGCAGTA ACACCCGGAAATGAGTTGCAGCATGATTCATACTCCAAAGTTCCACCTATTGAATCCAGTCAGGAAAATGATGAAAACTCATATCGAAGGCTTGGATTTG GTCATAGGTTACTTGTCAATGGTTTTAGTAGAAAGGTGTCACTGGTCCATGATGGTGAACGTGAACCGGCTAGGTTGCTGAGAAGTGGTGCATTAGAGCA GCAGAGCTGGCACAATGAAGTTACATATCAAGCAACTCCAGAGAAAGCATACAACAAGCAACTGGGACATAAATATTCTATCGATTCAATCACGTCTTCA CCACCATTGGAACATATGAAAATATCTTTCCACCCTATTGATGGCTTTGAGGATTCTAAACTGAAACTGAAGTTTCCTGATGGGAACCATGGTAATGAAA GCATTAGAGACATGTTTCCATCATTTCAATTGATTCCGGAGACTGCCATTCCACTGTGCAATGTGGGTTCTGACTCTGATGATGATACATTCTGTAGATC CTCTCCTTATATGTCTGATGATCATCTTAGCCATCACTCTGAATCAGATTCTGAGCGGTGGGATTCTGATGATTCTCCTGAAAGCAAGGACCATGAGCTA TATGATGCTTTGCGCAGAATATCTCCAGTTGAATCTTTTTCAAGCTCTCTGCAGCCTGGAGAAGCTGGCAATAATCAAAGTACATATACCGAGAATGGCA CAGATCCATCTCTCTCTGCATCTTCATTGGATCTTCCATGTTTTGATGCCATGAACTCTGTAGTGTATGGAGAAAAAAAGGATAATTTGCATGAAAGGAA TCAACAAGAGTTGGAGTATCTTAAAGATTCCACCCCATTGCCACCACCTCTTCCCCCAGTTCAATGGCGAGTTTCCAAGCCCAACTCTGATATATCAGAA GGCAAACTACATGCTCTATCCGAAGGTCATGAACATGGATTTGATATAAAACCTTTGGAATCTACTGTACCCCAGCAACCTAAGCCATCCCCAGCTGATG ATCACAAAATGAATGAGGATACCATTGCATTTAAACCAAAAAGCAAGGAACAGGATCAGCAGAAGTTGAATTGTCACAAAGAAGCTAATCAATATGCAAA TGGCAAGGATATAGATGAAAAGGATGATTTCTTGCATCAAATCAGAACCAAATCATTCACTCTGAGACGCACCGGAAAAGCAAAGCCATCTTTATCCTCA GGTCCCACTGCGAATAACAAAGTCAGTGCTATTTTGGAGAAAGCAAATGCAATCCGCCAGGCTGTTGCGAGTGATGATGGGGAAGATGATACTTGGAGTG ACACTTGA
AA sequence Show only first row Show all	>Potri.004G057100.11 pacid=42795755 polypeptide=Potri.004G057100.11.p locus=Potri.004G057100 ID=Potri.004G057100.11.v4.1 annot-version=v4.1 MPLVRFEVRNEYGLGQGELYREANSEGDSKAVLDGVAVAGLVGILRQLGDLAEFAAEVFHGLQERVMSTASRSHKLMVRVQNIEAALPPLEKVVLAQTSH IHFAYTPGSEWHPCIQNEQNHFIYNDLPRFIMDSYEECRDPPRLHLLDKFDTGGPGSCLKRYSDPAYFRRVSGNVTGPDAEKLPKDKRARKSKKKHSSPR NGDVAHYASMSNHSGRYCIFMKEASAVMFNWMKLMCTWYLLCRMQFTTPNGNGQTSPSHTASTIDTTLKSDAGDHSNSFDSRTGSGYIECVFHLNSSVQA EEEEPKELSSRFMQQNDVPDSVFPDRQPGMADNNFHHTSSPEQIAAPISSCVTWDEKEEIVEPSGQHYDEDEISEVLAAEPDLDTHDRSTVNLKNPNPLD IVLDGANTPKSSSSRSQLDEVESEPDDFMDALNTIESESENDIDCQTKCEVEQFSSSVNNEVEETILEVTSHISDHHPSEYESRTLSVISSNEKSPCELP SSVSLKSFAYEQESHVSGNSSKLDSSPGIECSRSANVLDNSKVESVSDPPSSSVSATSISNAEGPLSDKIISSSNKSQESQNDFSSVQSTTFWTNGGLLG LEPSKPPDFAVSNAKSPDSVTRSKDETGLPTNHTSMPINDGGKPGRLIKDAGSIESAPTSKGSTSWHDDQDSKVEKPGDFHQGNRISHGYEDGPNITSAV TPGNELQHDSYSKVPPIESSQENDENSYRRLGFGHRLLVNGFSRKVSLVHDGEREPARLLRSGALEQQSWHNEVTYQATPEKAYNKQLGHKYSIDSITSS PPLEHMKISFHPIDGFEDSKLKLKFPDGNHGNESIRDMFPSFQLIPETAIPLCNVGSDSDDDTFCRSSPYMSDDHLSHHSESDSERWDSDDSPESKDHEL YDALRRISPVESFSSSLQPGEAGNNQSTYTENGTDPSLSASSLDLPCFDAMNSVVYGEKKDNLHERNQQELEYLKDSTPLPPPLPPVQWRVSKPNSDISE GKLHALSEGHEHGFDIKPLESTVPQQPKPSPADDHKMNEDTIAFKPKSKEQDQQKLNCHKEANQYANGKDIDEKDDFLHQIRTKSFTLRRTGKAKPSLSS GPTANNKVSAILEKANAIRQAVASDDGEDDTWSDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.004G057100 [exp]	0	1
AT3G24740			Protein of unknown function (D...		Potri.002G216600 [exp]	1.73	0.8997
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	1.73	0.9177	BGAL9.1
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	3.16	0.9171
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.010G174400 [exp]	5.29	0.8759
AT1G72230			Cupredoxin superfamily protein...		Potri.002G101300 [exp]	9.48	0.8935
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	12.64	0.8583
AT1G07120			unknown protein		Potri.009G073600 [exp]	13.26	0.8863
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	13.56	0.8995
AT1G22060			unknown protein		Potri.002G091700 [exp]	16.24	0.8571
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.010G091500 [exp]	17.17	0.8384	Pt-KAPP.2

Compare expression of checked genes

Potri.004G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.