Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42610 242 / 1e-82 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT4G18610 217 / 1e-72 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G78815 215 / 9e-72 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT1G07090 203 / 3e-67 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G58500 201 / 2e-66 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT3G23290 196 / 3e-64 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT1G16910 193 / 1e-63 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1) AT2G31160 186 / 4e-60 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT5G28490 178 / 2e-57 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT3G04510 178 / 4e-57 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066400 [exp] 331 / 5e-118 AT2G42610 238 / 5e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G109900 [exp] 255 / 4e-88 AT2G42610 238 / 3e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 253 / 7e-87 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.002G214200 [exp] 249 / 1e-85 AT2G42610 240 / 5e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.014G142400 [exp] 248 / 2e-85 AT2G42610 259 / 1e-89 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 216 / 1e-71 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 210 / 2e-69 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 196 / 2e-64 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 191 / 2e-62 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029219 [exp] 252 / 4e-86 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 251 / 1e-85 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029838 [exp] 247 / 2e-84 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10020700 [exp] 241 / 4e-82 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10022023 [exp] 195 / 6e-64 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 192 / 6e-63 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 186 / 3e-60 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10024901 [exp] 186 / 1e-59 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 186 / 1e-59 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 184 / 2e-59 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [poplar] [flax] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Potri.004G057300.1 pacid=42794557 polypeptide=Potri.004G057300.1.p locus=Potri.004G057300 ID=Potri.004G057300.1.v4.1 annot-version=v4.1 ATGTCAGGTGATCAAAGGCCTAAAGATTCTGCTGAAGGCTCTTCGCGATCTGGAGGCGATCACCACCAGCTTCAATCAGCTCCTTTGAGCCGGTATGAGT CGCAGAAACGGCGAGACTGGAACACTTTCGGGCAGTACTTGAAGAATCAGAGACCCCCAGTTTCATTATCTCAGTGTAATTGCAATCATGTGCTTGATTT CCTTCGGTATCTTGATCAGTTTGGCAAGACTAAGGTTCATCTACATGGGTGCGTCTTCTTTGGACAACCTGATCCTCCTGCTCCTTGTACATGCCCTCTA AGGCAAGCTTGGGGGAGCCTTGATGCCCTAATCGGACGCCTTCGAGCAGCTTTTGAGGAGCATGGAGGATCAGCGGAGACTAACCCTTTTGGAAATGGAG CTATTCGGGTTTATTTGCGTGAAGTGAAAGAGTGTCAAGCTAAGGCAAGAGGGATTCCTTACAAGAAGAAGAAGAAGAAGAAGACTCAAATAAGGCCAAG AGACGAAGCAAAGCCTTCGATGCAGACAGCTTAA
AA sequence Show only first row Show all	>Potri.004G057300.1 pacid=42794557 polypeptide=Potri.004G057300.1.p locus=Potri.004G057300 ID=Potri.004G057300.1.v4.1 annot-version=v4.1 MSGDQRPKDSAEGSSRSGGDHHQLQSAPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPL RQAWGSLDALIGRLRAAFEEHGGSAETNPFGNGAIRVYLREVKECQAKARGIPYKKKKKKKTQIRPRDEAKPSMQTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.004G057300 [exp]	0	1
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.007G012200 [exp]	6.00	0.6841
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.008G072700 [exp]	8.94	0.6958	PFE2.2
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G066400 [exp]	9.43	0.7190
AT1G59940		ARR3	response regulator 3 (.1)		Potri.010G037800 [exp]	11.83	0.5982
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.014G176600 [exp]	14.83	0.6374
AT3G55140			Pectin lyase-like superfamily ...		Potri.008G048600 [exp]	16.97	0.7055
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	22.80	0.6770
AT4G09890			Protein of unknown function (D...		Potri.002G065200 [exp]	25.88	0.6924
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G109900 [exp]	27.11	0.6796
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	27.49	0.6324

Compare expression of checked genes

Potri.004G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.