Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29195 163 / 2e-51 unknown protein AT1G06980 106 / 2e-29 unknown protein AT2G30230 104 / 1e-28 unknown protein AT4G02090 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066500 [exp] 238 / 4e-81 AT1G29195 170 / 6e-54 unknown protein Potri.013G153100 [exp] 115 / 4e-33 AT2G30230 189 / 5e-62 unknown protein Potri.019G123900 [exp] 110 / 5e-31 AT2G30230 159 / 3e-50 unknown protein Potri.009G110700 [exp] 45 / 3e-06 AT5G66580 77 / 2e-18 unknown protein Potri.004G149800 [exp] 45 / 3e-06 AT5G66580 91 / 7e-24 unknown protein Potri.006G076500 [exp] 42 / 5e-05 AT2G30230 42 / 7e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042244 [exp] 103 / 5e-28 AT1G06980 173 / 1e-55 unknown protein Lus10026407 [exp] 99 / 3e-26 AT1G06980 176 / 8e-57 unknown protein Lus10020386 [exp] 45 / 8e-06 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 44 / 1e-05 AT1G06980 44 / 1e-05 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.004G057500.1 pacid=42795681 polypeptide=Potri.004G057500.1.p locus=Potri.004G057500 ID=Potri.004G057500.1.v4.1 annot-version=v4.1 ATGAAGGACACCATAAGGTGTTGTATCTCTTGCATTCTACCATGCGGAGCTCTTGATGTAATCAGAATAGTACACTCTAATGGTCGTGTAGAAGAGATCA GTGGAACAGTCCGAGCTTGTGAGATCATGAAAGCATATCCAAAACATATCTTGAAAAAGCCATCTGCACCATCTGATGATGGGGTTGTTCCAAAGATTGT TATAGTCCCACCAGATGCCGAGCTACAACGTGGAAAGATTTACTTTTTGATGCCAGCTCCACCAGCACAGGAAGCCAAGAGTTCTCGATCATCAAGAGGT TCCGGTACGAGAAAGAAAAGAAGAGAGATAAGCAATAATAACAGAAGTGAAAGCAACAACTCGACCCATCACGGTACCGACTCCATTTCAATGACAACAA ACCTTCTCATTTCTGATCAGTATTTGAGTGAGATTCTATCGGAAAAGATATCAACCCAGAGAGATCGAAGAAGAGGCCGTGTTGGTGTGTGGAGACCCCA TTTAGAAAGCATATCAGAGGCACCATATGATGCATAA
AA sequence Show only first row Show all	>Potri.004G057500.1 pacid=42795681 polypeptide=Potri.004G057500.1.p locus=Potri.004G057500 ID=Potri.004G057500.1.v4.1 annot-version=v4.1 MKDTIRCCISCILPCGALDVIRIVHSNGRVEEISGTVRACEIMKAYPKHILKKPSAPSDDGVVPKIVIVPPDAELQRGKIYFLMPAPPAQEAKSSRSSRG SGTRKKRREISNNNRSESNNSTHHGTDSISMTTNLLISDQYLSEILSEKISTQRDRRRGRVGVWRPHLESISEAPYDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29195			unknown protein		Potri.004G057500 [exp]	0	1
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.003G195300 [exp]	8.48	0.6381
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	10.81	0.6546
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	15.23	0.6644
AT1G35430			unknown protein		Potri.019G079800 [exp]	29.08	0.5902
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	29.79	0.6194
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.001G028400 [exp]	32.61	0.5943
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	39.11	0.5903
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	39.54	0.5811
					Potri.002G068100 [exp]	44.23	0.5886
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	45.00	0.5935

Compare expression of checked genes

Potri.004G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.