Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PEX7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29260 555 / 0 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G58230 94 / 2e-21 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 93 / 6e-21 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 86 / 4e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 85 / 2e-18 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 83 / 3e-17 TAF5 TBP-associated factor 5 (.1) AT2G05720 79 / 9e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT4G18900 77 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 77 / 2e-15 Coatomer, beta' subunit (.1.2) AT4G02730 76 / 2e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066600 [exp] 420 / 3e-150 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G148500 [exp] 92 / 3e-21 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 92 / 8e-21 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 92 / 2e-20 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 91 / 2e-20 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 89 / 8e-20 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 89 / 2e-19 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 88 / 4e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 84 / 3e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029221 [exp] 558 / 0 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10007274 [exp] 557 / 0 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10005074 [exp] 91 / 2e-20 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 90 / 5e-20 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 90 / 7e-20 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 89 / 9e-20 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 89 / 1e-19 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 89 / 1e-19 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 89 / 2e-19 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 85 / 6e-18 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G057600.1 pacid=42794614 polypeptide=Potri.004G057600.1.p locus=Potri.004G057600 ID=Potri.004G057600.1.v4.1 annot-version=v4.1 ATGCCAGTCTTCAAAACCCCATTCAATGGCTACTCCGTCAAATTCAGCCCATTTTACGAATCCCGTCTCGCCGTCGCCACTGCCCAGAACTTCGGAATCC TCGGCAACGGTCGTCTCCACGTCCTCTCCTTACCTCCAGCACCCTCCTCCCCTCTAACCGAACTCATCTCCTTCGACACTGCTGATGGCATCTACGACCT TGCCTGGTCTGAATCCCACGATTCCCTCTTAATCGCAGCTGTGGCCGATGGGTCCGTCAAGCTTTACGACACCGCCTTACCCCCAACACAAAACCCAATT CGTTCCCTCCAGGAACACACGCGTGAAGTCCACTCAGTCGATTACAATCCCACGCGCCGTGATTCTTTTATTACCGCTTCCTGGGATGACACGATTAAAT TATGGACCCTTGACAGGCCGGCGAGTATTCGTACGTTTAAAGAACACGCGTATTGTGTTTATTCTGCTGCGTGGAACCCGAGGCATACGGATGTTTTTGC ATCTGCTTCCGGGGACTGTACTGTGCGAATCTGGGACGTGCGTGAGCCGGGGAGTACGATGATTATTCCAGGTCATGATTTTGAGATTTTGTGTTGTGAT TGGAATAAATATGATGATTGTATTATTGCTACTGCATCGGTGGATAAGAGTATTAAAGTATGGGATGTAAGGAGTTTCAGAGCTCCGATTTCGGTTTTGA ATGGACATGGGTATGCTGTTAGGAAAGTTAAGTTTTCGCCCCATCATAGGAATTTGATGGTTTCGTGTTCGTATGATATGAGTGTTTGTATGTGGGATTT TATGGTTGAAGATGCATTGGTTGGGAGGTATGATCATCATACTGAGTTTGCTGTTGGAGTTGATATCAGTGTGCTTGTTGATGGGTTGATGGCAAGCACT GGGTGGGATGAGTTGGTTTATGTTTGGCAGCATGGGACGGACCCGAGAGCACCTTGA
AA sequence Show only first row Show all	>Potri.004G057600.1 pacid=42794614 polypeptide=Potri.004G057600.1.p locus=Potri.004G057600 ID=Potri.004G057600.1.v4.1 annot-version=v4.1 MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRLHVLSLPPAPSSPLTELISFDTADGIYDLAWSESHDSLLIAAVADGSVKLYDTALPPTQNPI RSLQEHTREVHSVDYNPTRRDSFITASWDDTIKLWTLDRPASIRTFKEHAYCVYSAAWNPRHTDVFASASGDCTVRIWDVREPGSTMIIPGHDFEILCCD WNKYDDCIIATASVDKSIKVWDVRSFRAPISVLNGHGYAVRKVKFSPHHRNLMVSCSYDMSVCMWDFMVEDALVGRYDHHTEFAVGVDISVLVDGLMAST GWDELVYVWQHGTDPRAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.004G057600 [exp]	0	1	PEX7.1
AT2G47590		PHR2	photolyase/blue-light receptor...		Potri.014G128500 [exp]	3.87	0.6842
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	8.24	0.7667	Pt-FTSH4.1
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.001G356100 [exp]	10.81	0.6652	Pt-ERF3.1,ERF40
AT1G54215			proline-rich family protein (....		Potri.003G064900 [exp]	20.78	0.6866
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	27.65	0.6570
AT3G47670			Plant invertase/pectin methyle...		Potri.001G108200 [exp]	27.71	0.6223
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.010G238800 [exp]	33.27	0.6481
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	33.36	0.6800
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	46.28	0.6290
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.010G048200 [exp]	57.44	0.6516	EIF4.3

Compare expression of checked genes

Potri.004G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.