Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09850 362 / 4e-121 XBCP3 xylem bark cysteine peptidase 3 (.1) AT5G43060 350 / 3e-116 Granulin repeat cysteine protease family protein (.1) AT1G47128 349 / 8e-116 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 334 / 6e-110 Granulin repeat cysteine protease family protein (.1) AT4G35350 306 / 3e-100 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 302 / 7e-99 XCP2 xylem cysteine peptidase 2 (.1) AT4G23520 288 / 2e-93 Cysteine proteinases superfamily protein (.1) AT3G19400 280 / 3e-90 Cysteine proteinases superfamily protein (.1.2) AT4G36880 278 / 3e-89 CP1 cysteine proteinase1 (.1) AT3G48340 278 / 3e-89 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G066800 [exp] 753 / 0 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1) Potri.011G066900 [exp] 651 / 0 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1) Potri.014G024100 [exp] 370 / 6e-124 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.005G232900 [exp] 360 / 3e-120 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.009G098100 [exp] 350 / 5e-116 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 348 / 5e-115 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 313 / 3e-103 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.002G005700 [exp] 311 / 2e-102 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.005G256000 [exp] 304 / 1e-99 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 353 / 3e-117 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 353 / 5e-117 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 353 / 7e-117 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 352 / 2e-116 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 339 / 3e-112 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10019827 [exp] 303 / 3e-99 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10013204 [exp] 296 / 1e-96 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 296 / 2e-96 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10002199 [exp] 268 / 1e-85 AT5G45890 361 / 2e-124 senescence-associated gene 12 (.1) Lus10033040 [exp] 266 / 1e-84 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.004G057700.1 pacid=42795631 polypeptide=Potri.004G057700.1.p locus=Potri.004G057700 ID=Potri.004G057700.1.v4.1 annot-version=v4.1 ATGTCATCAGAGATGGAAGATTTCAAGAAATCCCAAATGGTTCATCTAATTCTCTTGCTTCTAGTTGGGCTAACAAGCGTGTCTTCTAGCCTCCCTAGTG AGTACTCTATAGTTGGCAATGACTTCAGTGAGCTTCCACCAGATGAAAGCATCATTGAAATCTTTCAACAATGGAGAGATAGGCACCAGAAGGCTTACAA GCATGCAGAAGAGGCAGAGAAGAGGTTCGGGAATTTTAAGAGGAACCTGAAATATATAATTGAGAAAACAGGAAAGGAAACAACTCTGAGGCATAGGGTG GGGTTGAACAAGTTTGCTGATTTGAGCAATGAGGAGTTCAAGCAACTTTATCTGTCAAAGGTGAAGAAACCCATCAACAAAACGAGGATTGATGCAGAAG ACAGGAGTCGGAGAAACTTGCAGTCGTGCGATGCACCTTCCAGCTTGGATTGGAGGAAGAAGGGAGTTGTCACTGCTGTTAAGGACCAAGGAGACTGTGG AAGTTGTTGGTCATTCTCCACAACTGGAGCCATAGAAGGAATAAATGCCATTGTCACTAGCGACCTGATTAGCCTCTCAGAGCAAGAGCTTGTAGACTGT GATACAACCAATTATGGGTGTGAAAGAGGCTATATGGACTATGCTTTCGAATGGGTTATAAACAATGGTGGAATCGATACAGAAGCTAATTATCCTTATA CAGGAGTTGATGGTACCTGCAACACAGCCAAGGAGGAAATAAAAGTTGTATCCATTGACGGGTATAAAGATGTAGATGAAACGGACAGTGCACTCTTGTG TGCTGCTGCTCAACAACCCATTAGTGTTGGTATTGATGGTTCTGCGATAGATTTCCAACTGTATACTGGTGGAATCTATGATGGTGACTGCTCTGATGAT CCAGATGACATTGATCATGCTGTTTTGATAGTTGGCTATGGTTCAGAAAATGGTGAAGATTATTGGATAGTGAAGAATTCATGGGGCACATCATGGGGAA TTGAAGGATATTTCTATATAAAGAGGAACACTGATTTACCTTATGGTGTATGCGCAATCAATGCAATGGCCTCATATCCAACAAAAGAAGCTTCTGCACA ATCTCCAACTAGTCCTCCATCGCCTCCGTCGCCACCGCCTCCACCTCCACCTCCACCAACACCAGTGCCACCTCCCCCCTCCCCTCAACCAAGTGACTGT GGAGACTTCTCCTACTGCCCGAGTGATGAGACTTGCTGTTGCATTCTTAACGTCTTTGATTACTGTCTTGTCTACGGTTGCTGTGCATATGAGAATGCTG TTTGCTGCGCTGACTCTGTGTACTGCTGTCCCAGTGATTACCCTATTTGTGATGTTGAAGAAGGGCTCTGCCTCAAGGGCCAGGGAGATTATCTGGGAGT GGCTGCAAGCAAACGACATATGGCTAAGCACAAGTTTCCCTGGACCAAGTTGCAGGAAAGAGCGAAAACGGACCACCGTGTTCTACAGTGGAAGAGGAAC CCCTTTGCTGCAATGCGCTGA
AA sequence Show only first row Show all	>Potri.004G057700.1 pacid=42795631 polypeptide=Potri.004G057700.1.p locus=Potri.004G057700 ID=Potri.004G057700.1.v4.1 annot-version=v4.1 MSSEMEDFKKSQMVHLILLLLVGLTSVSSSLPSEYSIVGNDFSELPPDESIIEIFQQWRDRHQKAYKHAEEAEKRFGNFKRNLKYIIEKTGKETTLRHRV GLNKFADLSNEEFKQLYLSKVKKPINKTRIDAEDRSRRNLQSCDAPSSLDWRKKGVVTAVKDQGDCGSCWSFSTTGAIEGINAIVTSDLISLSEQELVDC DTTNYGCERGYMDYAFEWVINNGGIDTEANYPYTGVDGTCNTAKEEIKVVSIDGYKDVDETDSALLCAAAQQPISVGIDGSAIDFQLYTGGIYDGDCSDD PDDIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIEGYFYIKRNTDLPYGVCAINAMASYPTKEASAQSPTSPPSPPSPPPPPPPPPTPVPPPPSPQPSDC GDFSYCPSDETCCCILNVFDYCLVYGCCAYENAVCCADSVYCCPSDYPICDVEEGLCLKGQGDYLGVAASKRHMAKHKFPWTKLQERAKTDHRVLQWKRN PFAAMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	0	1
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	1.41	0.9212
AT1G69450			Early-responsive to dehydratio...		Potri.010G164100 [exp]	2.00	0.8901
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	2.44	0.9150
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	2.44	0.9191
AT2G47115			unknown protein		Potri.014G115200 [exp]	5.00	0.8848
					Potri.002G060300 [exp]	5.91	0.8175
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	6.00	0.8790	AHA10.1
					Potri.013G031900 [exp]	7.61	0.8311
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	8.48	0.8747
					Potri.005G045300 [exp]	9.48	0.8547

Compare expression of checked genes

Potri.004G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.