Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29240 205 / 2e-57 Protein of unknown function (DUF688) (.1) AT2G34170 172 / 6e-46 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT2G30990 92 / 5e-19 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT5G45850 68 / 1e-11 Protein of unknown function (DUF688) (.1) AT4G18630 65 / 1e-10 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067000 [exp] 1105 / 0 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.014G142800 [exp] 126 / 5e-30 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.016G123700 [exp] 44 / 0.0003 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007276 [exp] 206 / 7e-58 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10029223 [exp] 206 / 2e-57 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10015280 [exp] 177 / 6e-47 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 169 / 1e-44 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10033602 [exp] 92 / 4e-19 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 82 / 6e-16 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 46 / 0.0001 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 44 / 0.0004 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.004G057800.3 pacid=42796604 polypeptide=Potri.004G057800.3.p locus=Potri.004G057800 ID=Potri.004G057800.3.v4.1 annot-version=v4.1 ATGGCGGAACGGAAATTGAATTTAAATGCACCGCTCCTATCAGTGAGGCGAATTTCTAACATAGCAACAACTTCAGATGGAGCAAAAACTAAGAAACTTG AGAATTCCCGGCTCAATAGACGCCATGCTCTTCCTCCATACAAACCAGACACAAGTTTGGATCAAGTGACTGAACCTGTTGCAGTTCCTTTCCACTGGGA ACAGATCCCTGGTAGAGCAAAGGATAATTCTATGGAGCCACCTAAAGTTGCCGAGGATGCTTCTGTTACTCCAAAGGTTCCTCCTAGAAGGTCGTTGGAT ATTGTAAGGCACCATAAGGGAAAACGTGAGCCTAAAGTCCCCAAGGAGGCTTCTGTTAAGCCACTTATTTCTTCCAGAAGGGTGTTGGATGTTGTAAAGC ACCAGAAGGAAAAGCCAGAGCCTAAAGTCCCCAAGCAGGCTTCTGTTACTCAAAGGAATCCTCCGAGAAAGGTGTTGGATCTTGCAAAGCACCAGAAGGA AAAGAAATCCAACGATCAAAGTTTGTCTAGGCCCAAAGCTGAAGCAAATTCTTTCAACAAGAACGTAAGAAAGTTAGATTACTCTAGAGAGGGACCAAAT GAGAAATCGGGTTTGAATTCAGATGATGATGATGTTTACTCTGATGCACTTGACGCTTTGTCCCCAACAGATTCAATCTCCATGAACTGTAGTGCAAGTG GTGTGAGTGGCTTTGATGTTCCGGTTGTGAAGCCATCAGGAACCTTTTCCAAGGATCAACAAACACGAGATTTCATGATGAATCGCTTCTTACCTGCGGC CAAGGCAATGGCTTTGGAGCCAGCTCATTATGCTTCAAGAAAGCAACCTGTGGTAGTTGAACAATTAAGACCAATTACGAAGGTGGTTCATGGGAATAGG ACACCTCCTCCCAGTAAATCTCAGTCAATAATTATCTCAAATTATGGCCAGGATATTGAAGAGAAAGAAAGTGAAGATGAATATGATGGGTATGAAGGTT CTGGGAATATATCAACTAAAGCTTGTGGTTGGTTTCCTCGCTTATGCTTTAAGAATTCATTGGGTCTCCTAAATCCCATTCCTGGATTGAAACTTAGGAC TCAGGCTTCCATGTCTTCTACCAATGATGTTGAAAAACTGAGCAGAGCTTCTCCGAACAGATCTGTTAGTCAAATCGTGAAAAAGCACTTAAAAGATGCT GCTAATAAGCTAAAGCAAGATAGCGGAGGGCAATCACCTAGGCTGCCGGAGGTTGAGAACAAGCTGTCCTGTGCATCTAATCGGTTCATCTATGCAAGTG ATCGGCAAACAATTAGTCGGACATCTCCTTTTAGGCGCTCAGCTGGTACATCTCCTTTCAGACGCTCAGGGTGCGTATCTCCTTATCGCAATGAAGCGCC TCAATCTCCCTTCCGTGGCAGGGGATTTCTAGGCATTCCTAAAGAGGCTGAGGATTTGAGAGCCAGTAGGTTGAATTTGTACAAAGGCATTAGCAAGTCT CAGGAACTATCATCCTACTATGGTGCTAAACGAGGGTCTCGCCCAGCAAGCCCTGTTGTTGAGAAGACACTGTATGTAGATACTGTACATAAGGCAGGAA TATTGTTCCCAGATTCACGTTCTTCAAATATCAAAAAGTATGTGGACTCCGAAAAAAGGGACTTTAAGACACCCTTGAAAAGCAGAGAAATGAAAAAAGC AGCTGGTGAAGAGTCTTCTTTCCAAGATGCAGAATTCCTGAATTTTCTGAAAGCAGAGAGTGAACTGGAAAATAAAGTCTCGTTGTCTGCGGATGCTGAT TCAGCTTCTCTTTCAGACAAACCAGACTTGATGGAGGACTATGCTAAAGCTTTAGTGTGTATAAGTGCAACTACTGAAGAAAATGTAAATATTGATGGTG ATCAGATTTCAAAAGAAGATGGTACAGGAAATGTGAAAAACAGTTTGGTACAATCTCCTCTTGCCCCAATTCTACCGAAATCACCGTCGGAATCTTGGCT TTGGCGAACCCTGCCTTCATTCTCGTCACAAAATTCACTTTCACATCTGCATCGGGGAACCAGTTTTCAGAGCAAATGGCAGGATACTAATACGCCCTCT ACTAATACCAAATGGGAAACCATTGTTAAATCATCCTATTTGCATCACGATCATGTACGCTATTCTGAGGAATTAATCCCTCACGCTTCTAAACACTCCA AAAGTTAG
AA sequence Show only first row Show all	>Potri.004G057800.3 pacid=42796604 polypeptide=Potri.004G057800.3.p locus=Potri.004G057800 ID=Potri.004G057800.3.v4.1 annot-version=v4.1 MAERKLNLNAPLLSVRRISNIATTSDGAKTKKLENSRLNRRHALPPYKPDTSLDQVTEPVAVPFHWEQIPGRAKDNSMEPPKVAEDASVTPKVPPRRSLD IVRHHKGKREPKVPKEASVKPLISSRRVLDVVKHQKEKPEPKVPKQASVTQRNPPRKVLDLAKHQKEKKSNDQSLSRPKAEANSFNKNVRKLDYSREGPN EKSGLNSDDDDVYSDALDALSPTDSISMNCSASGVSGFDVPVVKPSGTFSKDQQTRDFMMNRFLPAAKAMALEPAHYASRKQPVVVEQLRPITKVVHGNR TPPPSKSQSIIISNYGQDIEEKESEDEYDGYEGSGNISTKACGWFPRLCFKNSLGLLNPIPGLKLRTQASMSSTNDVEKLSRASPNRSVSQIVKKHLKDA ANKLKQDSGGQSPRLPEVENKLSCASNRFIYASDRQTISRTSPFRRSAGTSPFRRSGCVSPYRNEAPQSPFRGRGFLGIPKEAEDLRASRLNLYKGISKS QELSSYYGAKRGSRPASPVVEKTLYVDTVHKAGILFPDSRSSNIKKYVDSEKRDFKTPLKSREMKKAAGEESSFQDAEFLNFLKAESELENKVSLSADAD SASLSDKPDLMEDYAKALVCISATTEENVNIDGDQISKEDGTGNVKNSLVQSPLAPILPKSPSESWLWRTLPSFSSQNSLSHLHRGTSFQSKWQDTNTPS TNTKWETIVKSSYLHHDHVRYSEELIPHASKHSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29240			Protein of unknown function (D...		Potri.004G057800 [exp]	0	1
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	1.00	0.9528
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148498 [exp]	3.46	0.9252
AT1G03820			unknown protein		Potri.007G137001 [exp]	4.58	0.9261
AT5G63180			Pectin lyase-like superfamily ...		Potri.015G087800 [exp]	5.65	0.9155
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	6.16	0.9292
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	8.12	0.9056
AT4G24780			Pectin lyase-like superfamily ...		Potri.006G196400 [exp]	8.48	0.9125
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	8.83	0.9176	QRT3.2
AT1G14890			Plant invertase/pectin methyle...		Potri.010G109300 [exp]	9.79	0.9009
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.018G096007 [exp]	12.04	0.9199

Compare expression of checked genes

Potri.004G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.