Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18640 694 / 0 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 682 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT2G40270 369 / 1e-120 Protein kinase family protein (.1.2) AT3G56050 364 / 2e-118 Protein kinase family protein (.1.2) AT1G63430 347 / 1e-109 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 324 / 3e-103 Protein kinase superfamily protein (.1.2.3) AT5G07150 302 / 6e-94 Leucine-rich repeat protein kinase family protein (.1) AT5G41180 226 / 3e-64 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 163 / 1e-41 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 160 / 9e-41 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067400 [exp] 1227 / 0 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 446 / 2e-147 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 439 / 1e-144 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 422 / 5e-139 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 405 / 2e-132 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G124800 [exp] 332 / 1e-103 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 309 / 3e-95 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.002G070900 [exp] 157 / 1e-39 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.004G049100 [exp] 149 / 4e-37 AT1G28440 1387 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025400 [exp] 681 / 0 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 660 / 0 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 636 / 0 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 485 / 3e-166 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 478 / 5e-160 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 473 / 2e-158 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 423 / 7e-139 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 414 / 7e-136 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 318 / 8e-99 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008310 [exp] 316 / 3e-97 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G058100.1 pacid=42796522 polypeptide=Potri.004G058100.1.p locus=Potri.004G058100 ID=Potri.004G058100.1.v4.1 annot-version=v4.1 ATGAGGGGTAGATGGAAAACAATTGGATTCCAATTTTTGTTCTTTTTGGTTTTGATTCTTGGTCTTGAAAATCAATGCTCCTGGTCGCTTAATGATGAGG GATTGGTTTTGCTGGAATTCCGGGGACGAGTGAATTCTGATCCTTTCGGTGCTCTTTCAAATTGGAATCCCAATGACATTGATCCTTGCTCATGGTCTGG TGTTCGTTGCGCTGCGGGAAAAGTGCAAATACTGGATCTGAGCGGTTTTTCTTTGGAAGGGACATTGGCGCCGGAGCTTGGCAAACTTGTTAACTTAACA TCCCTTGTACTCTACCGAAACCATTTCACTGGTGCCATTCCTAAAGAGATTGGAGAGCTCAGAAAGCTGGAATTACTGGACCTGAGGAATAATAACTTCA GTGGAGCAATTCCAGAAGAAATAGGAAGATTACTGTCATTAAAACACTTGTTGCTAAGAGACAATAAATTTGAGGGAAGCATTCCTCTGGAGATCAGGAG GCTTAACCTGCTTTCTGAATTTCGATTTGATGGAAACCTTGCATCTGCTGCTGTTACTGGAGTTAGCTTTGTCAATAGAAAACTTGGACATGGCATGTGG TGGAGCAGCTGGAAGCACTTGAATGGGGCGAATTCATTCATATTCCCAATTAAAGGAGCTTTTATGCATTACCTGAATTCCATGACATTGCAATTGTTCA AGCTCGGGAAGTATACTCTGCATGGTCGCAAAGAAAATTGCTTTGTTAAGCCAGATAGATCACCTGAGCAAAATGTAGAGATCCTTGCCAATTTTGTACG TCGCAGACTACTTGAGCAGTCCAGTAACCTCCAAGCTGCACCTGCGGGTGGTGGATCTTCCTCTCAACCAATTATTGCTCTTCCAACCACGCGAAGTAGT GGGGCTTTCCCAGCAATACCAAATGCAAAGAAGCATCAACCTCAATCCCCTGTGCCATTGGATTCACCTGCTAATCCTCCAACAATAGGAGCTAAGGCTT CAACTCATTCTGCTGAAAAGCCATTTAAAGAACAATCTCCAACCAATGGAACTTCTGGAAATACATGGATGTATTTCCTAATCATTCCAATCGTGGGTGT CTTGATCATTTTTGCAGCAGGCTTGCTCTTTAGGTGCCGGAAACAAGGAGTGACAACCATAGGTCCTTGGAAGACTGGTCTAAGTGGACAGTTGCAGAAA GCATTTGTTACAGGGGTTCCCAAGCTAAATCGATCAGAGCTGGAAACTGCCTGTGAGGATTTCAGCAATATCATTGATACATTTGATGGTTTCACTGCAT ATAAGGGAACACTGTCTAGTGGAGTTGAGATTTCTGTTGCATCAACTACAGTGGCTTCTTCCAAAGATTGGTCAAAGAATGCAGAGATGGCATACCGGAA AAAGATTGATACACTATCACGGATTAATCATAAGAACTTTGTAAACCTCATTGGCTTCTGTGAGGAGGATGAACCTTTCAATAGGATGATGGTTTTTGAA TATGCTCCAAATGGAACTCTCTTTGAGCATCTGCATGTTAAAGAAATGGAACATCTCGACTGGAATACAAGGATGAGGATTATTATGGGCGTTTCTTATT GCCTGCAATATATGCACCATGATCTGAATCCACCTATAGCACATTCTATACTGTGTTCACGCGCTATCTTCTTAACAGATGATTATGCTGCTAAGATTGC AGAGATCTGTTTTTTGCCTCAAGCTACATCAAACTCAAAGGTCTCAGGCGAATTGGAGGATTCACTGCCACCCCATGTTGATCCAGAAACAAACATCTAT CGTTTTGGGGTTTTGTTGCTTGAAATCATTTCCGGGAAGCTCCCATACTCGGAAGAACAAGGACCCCTTGAAAAATGGGCTGCTGAATATTTGAATGGCA AGCGGAGCATCAGCTGCATGATTGATCCAAGCCTTAAGTCTTTCAAAAACAACGATCTTGACGTCATCTGTGAGATTATCCAACAATGTATCCAATCAGA TGCAAGGCACAGACCAACAATGAAGGAGATCACCTCCAAATTGAGGGAAGTGATTTCTATCTCACCTGATCAAGCAACCCCTAGACTTTCTCCTCTGTGG TGGGCTGAGCTTGAGATATTATCCGTAGAGGCAACTTAG
AA sequence Show only first row Show all	>Potri.004G058100.1 pacid=42796522 polypeptide=Potri.004G058100.1.p locus=Potri.004G058100 ID=Potri.004G058100.1.v4.1 annot-version=v4.1 MRGRWKTIGFQFLFFLVLILGLENQCSWSLNDEGLVLLEFRGRVNSDPFGALSNWNPNDIDPCSWSGVRCAAGKVQILDLSGFSLEGTLAPELGKLVNLT SLVLYRNHFTGAIPKEIGELRKLELLDLRNNNFSGAIPEEIGRLLSLKHLLLRDNKFEGSIPLEIRRLNLLSEFRFDGNLASAAVTGVSFVNRKLGHGMW WSSWKHLNGANSFIFPIKGAFMHYLNSMTLQLFKLGKYTLHGRKENCFVKPDRSPEQNVEILANFVRRRLLEQSSNLQAAPAGGGSSSQPIIALPTTRSS GAFPAIPNAKKHQPQSPVPLDSPANPPTIGAKASTHSAEKPFKEQSPTNGTSGNTWMYFLIIPIVGVLIIFAAGLLFRCRKQGVTTIGPWKTGLSGQLQK AFVTGVPKLNRSELETACEDFSNIIDTFDGFTAYKGTLSSGVEISVASTTVASSKDWSKNAEMAYRKKIDTLSRINHKNFVNLIGFCEEDEPFNRMMVFE YAPNGTLFEHLHVKEMEHLDWNTRMRIIMGVSYCLQYMHHDLNPPIAHSILCSRAIFLTDDYAAKIAEICFLPQATSNSKVSGELEDSLPPHVDPETNIY RFGVLLLEIISGKLPYSEEQGPLEKWAAEYLNGKRSISCMIDPSLKSFKNNDLDVICEIIQQCIQSDARHRPTMKEITSKLREVISISPDQATPRLSPLW WAELEILSVEAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	1.00	0.9111
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	5.74	0.8934
AT5G37478			TPX2 (targeting protein for Xk...		Potri.017G144061 [exp]	7.07	0.9006
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	9.00	0.8771
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	10.00	0.8884
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	11.35	0.8540
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	11.48	0.8629	WRKY2.2
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	15.68	0.8546
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	16.61	0.7889
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	17.34	0.8815

Compare expression of checked genes

Potri.004G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.