Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18650 226 / 2e-74 transcription factor-related (.1) AT3G14880 89 / 2e-21 unknown protein AT1G58330 89 / 3e-21 ZW2 transcription factor-related (.1) AT4G18690 88 / 2e-20 unknown protein AT4G18680 79 / 2e-17 unknown protein AT5G45830 78 / 9e-17 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT1G09950 73 / 3e-15 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18660 52 / 4e-08 unknown protein AT1G68640 45 / 2e-05 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G22070 45 / 3e-05 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 138 / 1e-39 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 90 / 1e-21 AT3G14880 255 / 3e-86 unknown protein Potri.008G118300 [exp] 59 / 7e-10 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 50 / 6e-07 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 45 / 2e-05 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.005G082000 [exp] 44 / 4e-05 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.007G079900 [exp] 43 / 7e-05 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.007G085700 [exp] 42 / 0.0002 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 42 / 0.0003 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007282 [exp] 212 / 7e-69 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10029229 [exp] 206 / 2e-66 AT4G18650 207 / 2e-67 transcription factor-related (.1) Lus10042453 [exp] 120 / 1e-32 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 117 / 1e-31 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 110 / 4e-29 AT3G14880 141 / 5e-41 unknown protein Lus10039196 [exp] 109 / 1e-28 AT3G14880 135 / 1e-38 unknown protein Lus10015276 [exp] 99 / 1e-24 AT4G18690 204 / 6e-65 unknown protein Lus10013711 [exp] 97 / 6e-24 AT3G14880 251 / 2e-84 unknown protein Lus10028231 [exp] 91 / 8e-22 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10027812 [exp] 81 / 5e-18 AT1G58330 116 / 1e-31 transcription factor-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.004G058200.1 pacid=42793845 polypeptide=Potri.004G058200.1.p locus=Potri.004G058200 ID=Potri.004G058200.1.v4.1 annot-version=v4.1 ATGAAAGGCAAAGTTGGTGAGAGATTCTCTGAGTTCTTTGAGAAGTGGGCATGTCAACTGGATGAGTATCTACAACTGCTACTGAGGGCATCAAAACAGA GAGTTATTAATACCGTCTGTGATCAGCGAGAGCTACAAACTTTGGTGTCAAAAGTGACACAGCATTACAAAGACTACTTCACTATCAAATGGTCTTTAGC CCATGAAGATGTGCTTGCATTCTTTTGTCCAATTTGGGGTAGCCCTTTAGAGAATGCATATTCATGGTTTACTGGATGGAAACCTTCAACGATATTTAAA CTCATTGATTCAACGAGAATAAATCGGGTTCCTGGGTCGAGTCTTGCCGAGCTGACACAGGAACAGCTGAGAAAGATTGAGGAGCTGAGGGTGAAGATAA GGTTAGAGGAAGAGAAGGTGGAGAGGGAAATGGAGAGGCAACAGGTAGCTATGGCAGACAGGAAGATGTTTGAGTTGGCAAGGTTGACAGGCCGGGTCAA GGATAGCGAAACAATGGATCAGTTCGACGGGTTGGTGGAGGCGGCAATGAAGGGACTGATGGCGGGACTAGAGAAGGTTATGAAAGCAGCAGACTGTGTT AGGCTGAGGACTTTGAAGGGAGTTTTGGATGTTTTAAGTCCATTGCAGTGTGTGGACTTCTTAGCTGCAACTACTATGCTCCAAATTCAGCTAAGGCAAT GGGGAAAGAGAAGGGATAGTATTAGCAGAAAGGAGTAG
AA sequence Show only first row Show all	>Potri.004G058200.1 pacid=42793845 polypeptide=Potri.004G058200.1.p locus=Potri.004G058200 ID=Potri.004G058200.1.v4.1 annot-version=v4.1 MKGKVGERFSEFFEKWACQLDEYLQLLLRASKQRVINTVCDQRELQTLVSKVTQHYKDYFTIKWSLAHEDVLAFFCPIWGSPLENAYSWFTGWKPSTIFK LIDSTRINRVPGSSLAELTQEQLRKIEELRVKIRLEEEKVEREMERQQVAMADRKMFELARLTGRVKDSETMDQFDGLVEAAMKGLMAGLEKVMKAADCV RLRTLKGVLDVLSPLQCVDFLAATTMLQIQLRQWGKRRDSISRKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18650			transcription factor-related (...		Potri.004G058200 [exp]	0	1
AT3G19940			Major facilitator superfamily ...		Potri.007G073900 [exp]	3.00	0.8387
AT5G04310			Pectin lyase-like superfamily ...		Potri.008G032700 [exp]	6.16	0.8272
AT1G76070			unknown protein		Potri.005G245600 [exp]	8.12	0.8056
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.004G146350 [exp]	20.49	0.7560
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	24.49	0.7590
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	29.69	0.7696	Pt-RAB11.12
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	34.79	0.7677
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.012G118100 [exp]	36.41	0.7538
AT3G19940			Major facilitator superfamily ...		Potri.007G073850 [exp]	46.30	0.7436
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.002G225400 [exp]	54.90	0.7018

Compare expression of checked genes

Potri.004G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.