Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 736 / 0 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 684 / 0 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 662 / 0 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 617 / 0 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 486 / 1e-169 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 469 / 3e-162 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 457 / 5e-158 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 455 / 2e-156 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G01810 448 / 1e-154 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G07070 441 / 2e-151 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 893 / 0 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.013G156000 [exp] 505 / 7e-177 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 501 / 4e-175 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G127500 [exp] 496 / 4e-173 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 495 / 7e-173 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 495 / 1e-172 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 484 / 1e-168 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 476 / 2e-165 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 463 / 2e-160 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015275 [exp] 719 / 0 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007284 [exp] 660 / 0 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10022749 [exp] 486 / 3e-169 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10036280 [exp] 483 / 2e-168 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 481 / 2e-167 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 474 / 3e-164 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 474 / 3e-164 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029232 [exp] 462 / 1e-162 AT4G18700 466 / 3e-165 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007283 [exp] 468 / 7e-162 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10024448 [exp] 455 / 8e-157 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.004G058300.1 pacid=42794821 polypeptide=Potri.004G058300.1.p locus=Potri.004G058300 ID=Potri.004G058300.1.v4.1 annot-version=v4.1 ATGGCAACCAACAAAAAATTAGGAAACAAGAGCAATAATAGCCAAAGCCAAAGCCCTCTTCTGGGTCGGTACGAGATCGGCAAACTTCTTGGACATGGTA CTTTTGCTAAGGTATACCTTGCTAGAAACATTAAAACCAACGAAAGTGTTGCCATCAAAGTCATTGACAAAGAAAAAGTCCTCAAGGGTGGTCTAATTGC TCATATCAAACGTGAAATCTCCATTCTTCGCCTTGTTCGCCACCCCTATATTGTCCAGCTTTTTGAAGTCATGGCTACGAAAGCCAAGATTTACTTTGTC ATGGAATATGTTCGTGGTGGTGAGTTGTTCAATAAGGTTGCTAAAGGCAGGTTAAAAGAAGAGGTTGCCAGGAAGTATTTCCAGCAATTGATTTCAGCCG TTTCCTTTTGTCACGCCAGAGGTGTTTTTCATCGCGATTTGAAGCCGGAGAACTTGTTGCTTGATGAGAATGGTAACTTGAAAGTCTCCGATTTTGGATT GAGCGCAGTGTCTGATCAGATTAGACAAGATGGTTTGTTCCATACTTTTTGTGGGACACCGGCTTATGTTGCTCCTGAAGTTCTTGCAAGAAAAGGGTAC GATGCTGCTAAGGTTGATATCTGGTCTTGTGGGATTGTTCTGTTTGTGTTAATGGCTGGTTACTTACCATTTCATGATCAAAATGTCATGGTTATGTATA AAAAGATTTACAAGGGGGAGTTTAGATGTCCTAGGTGGTTCTCTTCTGAGCTAGTCAGGCTTCTTCATAAACTTCTGGATACTAACCCTGTTACAAGAAT TACAATCCCTGAGATTATGGAGAACAGGTGGTTCAAAAAGGGGTTTAAGAATATTAAATTTTATATCGAAGATGATAAAGTTTGTAGCGTTGAAGAGGAG GAAGATGTGGGTTCATCTTCTGATCAATCATTATCTGAATCGGAATCGGAATTCGAAACTAGAAGAAGGGTTACCTCTTTGCCTAGACCTGCAAGTTTGA ATGCTTTTGACATTATATCGTTTTCGCCTGGATTTGATTTATCTGGGTTGTTCGAGGAAGGTGGAGAGGGAGCAAGGTTTGTTTCGGGGGCCCCTGTGTC GAAGATTATATCTAAACTGGAGGAGATTGCGAAAGTTGTTAGCTTTACAGTGAGGAAAAAGGACTGTAGAGTGAGTTTGGAAGGGTCTAGAGAAGGTGTG AGAGGTCCATTAACAATTGCAGCTGAGATATTTGAGTTGACACCGAAATTGGTTGTGGTGGAGGTTAAAAAGAAAGGAGGGGATAGAGGAGAGTACGAGG AGTTTTGTAATAAGGAATTGAAACCTGGATTGCAGAAGTTGATGCAGGAGGAATCCGAGGCTGCTGCTGCTCCTAAAGTTATTACTACTGTTCCTGTGCC ATCGGGATCTCCACAATTCACCATCGATCCTTTTCCTACTGATTCTTCACAATTACCCGTTGATCCTTTTCCTACCGATTCCACACAATTACCTATTAGT CCTTTTCCTACCGATTCTACACAATTACCTATTGATCCTTTTCCTATCCTTTCTTCACATTTACCTTCGGATTCCGAATAG
AA sequence Show only first row Show all	>Potri.004G058300.1 pacid=42794821 polypeptide=Potri.004G058300.1.p locus=Potri.004G058300 ID=Potri.004G058300.1.v4.1 annot-version=v4.1 MATNKKLGNKSNNSQSQSPLLGRYEIGKLLGHGTFAKVYLARNIKTNESVAIKVIDKEKVLKGGLIAHIKREISILRLVRHPYIVQLFEVMATKAKIYFV MEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVSFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGY DAAKVDIWSCGIVLFVLMAGYLPFHDQNVMVMYKKIYKGEFRCPRWFSSELVRLLHKLLDTNPVTRITIPEIMENRWFKKGFKNIKFYIEDDKVCSVEEE EDVGSSSDQSLSESESEFETRRRVTSLPRPASLNAFDIISFSPGFDLSGLFEEGGEGARFVSGAPVSKIISKLEEIAKVVSFTVRKKDCRVSLEGSREGV RGPLTIAAEIFELTPKLVVVEVKKKGGDRGEYEEFCNKELKPGLQKLMQEESEAAAAPKVITTVPVPSGSPQFTIDPFPTDSSQLPVDPFPTDSTQLPIS PFPTDSTQLPIDPFPILSSHLPSDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.004G058300 [exp]	0	1
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192400 [exp]	10.14	0.7550
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Potri.017G084600 [exp]	16.34	0.7305
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	17.54	0.7402
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.003G048100 [exp]	28.19	0.7268
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	34.00	0.7273
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Potri.005G140900 [exp]	40.98	0.6383
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	63.05	0.6729
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.001G281000 [exp]	77.45	0.6669
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	78.16	0.6637
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.017G108800 [exp]	88.79	0.6372	SAMDC.4

Compare expression of checked genes

Potri.004G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.