Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45800 709 / 0 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G24230 315 / 5e-96 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 258 / 1e-75 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 228 / 4e-63 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 211 / 2e-57 BRL1 BRI1 like (.1.2) AT3G13380 197 / 6e-53 BRL3 BRI1-like 3 (.1) AT4G39400 184 / 2e-48 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G48480 177 / 3e-47 RKL1 receptor-like kinase 1 (.1) AT1G66830 176 / 1e-46 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 177 / 2e-46 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067900 [exp] 1129 / 0 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 337 / 2e-104 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107400 [exp] 321 / 2e-98 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G141200 [exp] 215 / 7e-59 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 206 / 7e-56 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 205 / 2e-55 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 201 / 3e-54 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.010G101100 [exp] 187 / 1e-49 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.008G140500 [exp] 186 / 4e-49 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029235 [exp] 779 / 0 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10007287 [exp] 778 / 0 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10036608 [exp] 350 / 4e-109 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 342 / 1e-106 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014996 [exp] 195 / 6e-52 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038875 [exp] 185 / 8e-49 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033533 [exp] 184 / 2e-48 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 184 / 2e-48 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 179 / 8e-47 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 177 / 2e-46 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G058500.1 pacid=42796124 polypeptide=Potri.004G058500.1.p locus=Potri.004G058500 ID=Potri.004G058500.1.v4.1 annot-version=v4.1 ATGGATGTGTTTTGCAGGTTTTTGTTTGTCTTTTCACTGTTTGTGTTTGTCGAATCTACATGCAACAGCACAGACCAAGAACTGGTCTCGAAGGCTTTTA GCTCTGTCTCTGGCTTCAATCTTTCCTGGTTTCAACATTCTGGTCCTGCTTCAAACTGTTCTCATCCTTCTATAACAGAAATAAGACTTCCTTCAAGAAA CTTGAGTGGAAGCATTTCTTGGAAGTATCTCAAGAACATGTCCCAACTGCACATAATTGATCTCTCCAGCAATTCACTTCAGGGTCGGGTGCCAGCTTGG TTTTGGTCTATAAAGAGCCTGCGTGAAGTCAATCTCTCCAAGAATGGGCTTGGAGGAAGCGTTGGGTCTGGGATTAATGGCTCATCTATATCAATGCTTA AAGTGCTCAATCTCTCAACCAACAGGTTCACCAACTTGGATAAACTCTCTGGTTTTGGGAATCTAGAGGTTCTTGATATCTCTCACAATGATTTAGGTTC TTTGCCTTCCGGGTTCGCTAACTTGACCAAGCTAGAGTCTCTAAACATCTCGAGCTGCAACATTTCAGGCAACATAACAGTCACTTCAGGTCTCCAATCA TTGAAGTATCTGGATGTCTCAAACAACACCATGAATGGTAAATTCCCTTCTGATTTCCCTCCATTAGATGGCCTTGAGTTCTTGAATGTTTCACTAAACA ACTTCTCAGGGCTTGTTGGCTATGACAAGTACAACAAATTTGGAAAATCTGCTTTTAGTCATGGTGGTAGTTTGATTTTCAACACCTCAAAAACCCCAAC TAATCGCACCATGAAGCCACAATCCCAGCCTCACGAGGGAACCATAAAAAAATACCCACCAGTTTACTTACATGCCAAAAAAGCAAGGCCCAAATCAAAA GCCAAAACTTTGATTATTAGTGTCTCATCGACATCAGCATTCCTCTTGGTTTCTATTGCTGTTTGCGTCTTCTGCATGCACAGAAGGCGAAAGATTGCAA AAAGAAACAAATGGGCAATCTCTAAACCAGTCCAATTCACATTCAAGATGGACAAATCAGGGCCGTTCAGCTTTGAAACGGAGTCAGGTTCATCATGGGT GGCAGACATTAAGGAGCCAACATCAGCACCAGTGATCATGTCATCTAAGCCATTGATGAACTTCACTTTCAAGGACTTGATTGCTGCCACCTCACAATTT GGCAAGGACTCTCTCCTAGCAGAGGGCAGGTGCGGACCCCTCTATAGGGCTGTCCTACCAGGGGACCTCCACGTGGCGATCAAGGTTTTGGAGAATGCAA GGGACCTTGATCATGGTGATGCAGTAGCTATTTTTGAAGATTTTTCCAAACTGAAACACCCCAACCTCTTGCCACTATGTGGGTACTGCATCGCAGGTAA AGAGAAGCTCGTACTGCACGAATTCATGTTCAACGGAGATCTCCACCGTTGGCTCCACGAGCTGCCCACACTCAAAACCAACTTGGAGGACTGGAGCGCT GACACGTGGGAGAATCAAAACATCCACGGGTCCCACGTTGCTTCTCCTGAAGAAAAAACTAACTGGCTCACGCGCCACCGAATTGCCGTCGGGGTGGCTC GTGGTGTTGCCTATCTCCACCACGCGGGATCCATTCATGGCCACCTCGTCGCGTCCAACATCCTCCTCTCTGATTCCATCGAACCCCGGGTTGCCGATTT TGGACTTCGAGACGTCGGCCAAAAGAACAGAAGTGTCGGTTTGGATAACAAAGATTGTGGGTTTGAGTATGACGTGTACTGTTTCGGGGTTGTGTTGATA GAGTTAATGACGGGCGAACAAGGGAGCGGAGAGAATGTGGGGTGGGTGAGGAGGCTAGTGAGAGAGGGTCGTGGTGGTGACGCGATTGACTCGAGGCTGA GACTCGGTGGCGACTCAACAAGCGAGATGGTTGAGTGCCTCCGAGTTGGGTACCTCTGTACGGCTGAGCTGCCTGAGAAGAGGCCCACCATGCAGCAAGT CTTGGGTTTGCTCAAAGACATACATCCGTGTTGA
AA sequence Show only first row Show all	>Potri.004G058500.1 pacid=42796124 polypeptide=Potri.004G058500.1.p locus=Potri.004G058500 ID=Potri.004G058500.1.v4.1 annot-version=v4.1 MDVFCRFLFVFSLFVFVESTCNSTDQELVSKAFSSVSGFNLSWFQHSGPASNCSHPSITEIRLPSRNLSGSISWKYLKNMSQLHIIDLSSNSLQGRVPAW FWSIKSLREVNLSKNGLGGSVGSGINGSSISMLKVLNLSTNRFTNLDKLSGFGNLEVLDISHNDLGSLPSGFANLTKLESLNISSCNISGNITVTSGLQS LKYLDVSNNTMNGKFPSDFPPLDGLEFLNVSLNNFSGLVGYDKYNKFGKSAFSHGGSLIFNTSKTPTNRTMKPQSQPHEGTIKKYPPVYLHAKKARPKSK AKTLIISVSSTSAFLLVSIAVCVFCMHRRRKIAKRNKWAISKPVQFTFKMDKSGPFSFETESGSSWVADIKEPTSAPVIMSSKPLMNFTFKDLIAATSQF GKDSLLAEGRCGPLYRAVLPGDLHVAIKVLENARDLDHGDAVAIFEDFSKLKHPNLLPLCGYCIAGKEKLVLHEFMFNGDLHRWLHELPTLKTNLEDWSA DTWENQNIHGSHVASPEEKTNWLTRHRIAVGVARGVAYLHHAGSIHGHLVASNILLSDSIEPRVADFGLRDVGQKNRSVGLDNKDCGFEYDVYCFGVVLI ELMTGEQGSGENVGWVRRLVREGRGGDAIDSRLRLGGDSTSEMVECLRVGYLCTAELPEKRPTMQQVLGLLKDIHPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	0	1
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	4.00	0.9372	PE6.1
AT2G21080			unknown protein		Potri.006G279200 [exp]	6.48	0.9254
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	8.30	0.9371
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.016G065900 [exp]	8.36	0.9256
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.006G227600 [exp]	9.16	0.9011
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	10.90	0.9213
AT4G38810			Calcium-binding EF-hand family...		Potri.004G166900 [exp]	10.90	0.9030
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	10.95	0.9202
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.007G029200 [exp]	12.00	0.9047
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	12.96	0.9307

Compare expression of checked genes

Potri.004G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.