Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29220 198 / 9e-60 transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068100 [exp] 491 / 2e-173 AT1G29220 262 / 1e-84 transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007288 [exp] 225 / 5e-70 AT1G29220 217 / 2e-67 transcriptional regulator family protein (.1.2) Lus10029236 [exp] 166 / 2e-48 AT1G29220 154 / 8e-45 transcriptional regulator family protein (.1.2) Lus10029237 [exp] 99 / 1e-24 AT1G29220 117 / 4e-32 transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07818 [poplar] [flax] HCNGP HCNGP-like protein
Representative CDS sequence Show only first row Show all	>Potri.004G058700.1 pacid=42794427 polypeptide=Potri.004G058700.1.p locus=Potri.004G058700 ID=Potri.004G058700.1.v4.1 annot-version=v4.1 ATGGCGTCCAGAAAGAAACAATTAGAAGGAATCGCATTACTCTCAATGTACAACGACGACGACGAAGAAGACGATGAAGAAATGGAAGATCTCCATTACC AACAACCACACAACGACATGGAGGAAGATGCTCTGAACGATGATAACGCCATGGCTACCGAAGCAGAAGCAGCTACCTATTGTCGAAATTCAACTCCCAA AGGAGGACTTTTACGGCCTTTGAAGCCGCAGCAGCAAGGAGGGACTATTAATTTGGAAACAAAAAGAAGTAATAGGAGAGGGAGGCTTGCTATTGTTGAT TATGGCCACGATGAAGTTGCTATGTCCCCTGAACCCGAGGAAGGGGAGTTTGAAGAGAAGCTTCAAAGTGTCAATGGTGTTATCCAAGAAAAATCTTCTC CAGGAACTGCTCATTTTTTATCTCCCAGTTTTCAAGCAACTCCACAATCATTTGAAAATTTAGGACCATCACAGCTTGATGAAATAAATGATACCACTAA TGAATCAGAAGCTGTCAACACCGAAGGTGCTAATGAGGTTCCTGCAGAGGGTGTTAATCCATTTGATAAATTTCTTCCTCCACCACCAAAAGAGAAGTGC CCAGAGGAGTTGCAAAAAAAAATTGATAAATTTCTTGCTTTGAAGAAAATTGGGAGAAGCTTCAATGCAGAAGTCTGCAATAAGAAGGATTATAGGAACC CTGACTTCTTACTGCATGCTGTGAGGTATCAAGTTATTGATGAGATAGGATCTTGCTTCAGTAAAGATGTATTTGACCCTCATGGATATGACCAAAGCGA CTACTATCTTGAGCTAGCAGAGGTTGGCATGAGGCGTGAAAGGGAGAGGAAGGAGCAAGAGTTGAAGAGAAGTACAAAGGTCGAATTTGTTATGGGGGGC ACTCAGCCTGGAGTGGTTGTACCTCCAACAAAGTTCAGTATGCCTATTCCAGTTGTCACCGCTAGTGGGATGCGTCCATCTTCAAATGCAGCTGATGCAG CTCCTCTTGAGGTTAGACAGAACAAGAAGTCAAAATGGGACAAGGTGGATGGTGATGGAAGGAATTTACTAATTGGTGGACAGGATTCTTTAGCTGCAGC AGCGGCAGCTCAAGCAGCACTATTATCTGCAGCTAATGTTGGTTCTGGATACACAGGTTTTGTGCAGCAGAAACGGCGAGAGGCAGAAGAAAAAAGATCC GGAGAAAGGAAGTTGGAAAGAAGATCTTGA
AA sequence Show only first row Show all	>Potri.004G058700.1 pacid=42794427 polypeptide=Potri.004G058700.1.p locus=Potri.004G058700 ID=Potri.004G058700.1.v4.1 annot-version=v4.1 MASRKKQLEGIALLSMYNDDDEEDDEEMEDLHYQQPHNDMEEDALNDDNAMATEAEAATYCRNSTPKGGLLRPLKPQQQGGTINLETKRSNRRGRLAIVD YGHDEVAMSPEPEEGEFEEKLQSVNGVIQEKSSPGTAHFLSPSFQATPQSFENLGPSQLDEINDTTNESEAVNTEGANEVPAEGVNPFDKFLPPPPKEKC PEELQKKIDKFLALKKIGRSFNAEVCNKKDYRNPDFLLHAVRYQVIDEIGSCFSKDVFDPHGYDQSDYYLELAEVGMRRERERKEQELKRSTKVEFVMGG TQPGVVVPPTKFSMPIPVVTASGMRPSSNAADAAPLEVRQNKKSKWDKVDGDGRNLLIGGQDSLAAAAAAQAALLSAANVGSGYTGFVQQKRREAEEKRS GERKLERRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	0	1
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	1.41	0.9137
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	1.41	0.9184	HMGB915
AT3G61260			Remorin family protein (.1)		Potri.014G081300 [exp]	1.73	0.9084
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	3.16	0.9026	MPK3.1
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	3.46	0.8991
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	3.46	0.9047
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	4.47	0.8968
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	5.29	0.8973
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	6.00	0.8970
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.006G003100 [exp]	6.16	0.8521

Compare expression of checked genes

Potri.004G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.