Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29200 687 / 0 O-fucosyltransferase family protein (.1.2.3) AT1G62330 560 / 0 O-fucosyltransferase family protein (.1) AT1G11990 535 / 0 O-fucosyltransferase family protein (.1) AT2G01480 321 / 3e-102 O-fucosyltransferase family protein (.1) AT1G14970 310 / 7e-98 O-fucosyltransferase family protein (.1) AT1G35510 298 / 3e-93 O-fucosyltransferase family protein (.1) AT4G24530 292 / 1e-91 O-fucosyltransferase family protein (.1) AT3G26370 291 / 6e-91 O-fucosyltransferase family protein (.1) AT5G65470 285 / 5e-89 O-fucosyltransferase family protein (.1) AT4G38390 285 / 1e-88 RHS17 root hair specific 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068300 [exp] 1121 / 0 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.011G010600 [exp] 595 / 0 AT1G62330 714 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G005100 [exp] 594 / 0 AT1G62330 709 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 308 / 3e-97 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 306 / 2e-96 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 300 / 8e-94 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 299 / 2e-93 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 293 / 1e-91 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 293 / 2e-91 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007290 [exp] 823 / 0 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10029239 [exp] 822 / 0 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10015558 [exp] 546 / 0 AT1G62330 733 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 320 / 1e-101 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 318 / 3e-101 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 304 / 1e-95 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 293 / 7e-92 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 293 / 9e-92 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 294 / 2e-91 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 287 / 1e-89 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G058900.1 pacid=42794225 polypeptide=Potri.004G058900.1.p locus=Potri.004G058900 ID=Potri.004G058900.1.v4.1 annot-version=v4.1 ATGAAAGATTATCAGACCAGAAGTTCAGAATGTTTGCCTGGTATTGATCCTATCCTTGGGAGGAGATTGTCGGGAGGGGATAATAATTGGAAAACTAAAG TTGCATTGCTTCATGATTTGAAAAACGAGCATGGAAATCTTGGTTCTTGTAAGGCAGTTTATGTTGGGAAAAGGCACTTGTGGTTCCGTAAGCATGTTAA GTCAATTGCTCTTATGTTTGCATTGATGGGGTCTCTTTTCTTGCTTGATTCTTTCACGGTGTCACTTTTTGATTCGATAAGTCTGCAAAATAGTTCACCC CCAATGACATCAAGCGGTGTTAAGGGGGATAGAACTGCATATGCTAATGAAGAGGAACGTTCAGTCCAGATGCATGGTCGGCTCCAAAACCTGGCTTACA GTGCTCTTGCCGAGAAAGAGTTTAAGCAAGATACATCGAATTTTTGGGAGGAACCACGGAAGGCATCTTTATGGAAACCTTGTGGAGATAGAAAAGATGC AGAAAAATTAGGGCAACCTGACAAAAACAATGGGTACATAATGGTCAGTGCAAATGGTGGTCTCAATCAACAAAGAGTAGCTATATGCAATGCCATTGCC TTGGCATCTTTACTTAACGCAACCCTAGTTCTTCCCAGATTTCTTTACAGCAATGTATGGAAGGATCCAAGCCAATTCGGTGATATCTATCAAGAGGAGT ATTTTATGAATATCATGAAGGATGAAGTGAATATCGTAAAGGAGCTTCCTTCTCATTTGAAGTCATTAGATATTGACGCAATCGGTAGCCTAATTACTGA TGCGGACATTGTGAAGGAGGCAACGCCCATCGATTACCTTACAAAAACTCTTCCTCTCCTGCTGCAAAATGGAGTTGTTCACTTTCTTGGATTCGGTAAT CGGCTTGGATTTGATCCGTTGCCTTCGAAACTTCAGAAATTAAGGTGCAAATGTAACTTCCATGCATTGAAGTTCGTGCCAAAAATCCAAGAAGCTGGTT CATTGTTGATCAGAAGGATAAGGAAGAATGACGCTGCACAGACTACATTGGACAGACAACTTTTCGGAGAGTTTCTGACTGGCAATCCCTCAAATAAACA TGATTCAGCAAGAGGCTCATCTAAATATCTTGCTTTACACCTGAGGTTTGAAGTGGATATGATTGCCTACTCCTTGTGTGATTTTGGAGGAGGGCAAAAG GAGAGAAGGGAACTCCAAGCCTACAGAGAAAGCCATTTCCCTATGCTTATGGAGCGCTTGAAACACTCCATGCCTATCTCTTCATCGGTGTTGAGAAACT TGGGGAGATGCCCATTAACACCCGAAGAAGCTGCACTTATGCTTGCTGGTCTTGGAGTCAAACATGGAACTTACATTTATCTTGCTAGTTCTCATATATA TGGGGGAAAATTTAGGATGCATTCATTCACTAACCTCTATCCTAACTTAGTCACAAAGGAAACTCTCCTGACACCCAGTGAGCTTGCACCTTTTAGGAAT TTCTCTTCGCAGCTAGCAGCATTGGATTTTATCGCCTGTGCAACTGCAGATGTCTTTGCCATGACTGATTCTGGAAGCCAACTCTCATCTCTGGTGTCTG GATTCCGCACTTACTATGGCGGTGGTCATGCTCCTACCCTGCGGCCTAACAAGAAGAGGCTAGCAGCAATTTTGTCAGAGAATGGCACCATAGGTTGGAA TAGTTTTGAAGATAGAGTAAGAAAGATGATTAAGGATGGTCAGAGTGTTCGCATACGGGGTTTTGGTCGAAGCATTTACAGACAACCAAGGTGCCCAGAA TGCATGTGTAAAACATACTAG
AA sequence Show only first row Show all	>Potri.004G058900.1 pacid=42794225 polypeptide=Potri.004G058900.1.p locus=Potri.004G058900 ID=Potri.004G058900.1.v4.1 annot-version=v4.1 MKDYQTRSSECLPGIDPILGRRLSGGDNNWKTKVALLHDLKNEHGNLGSCKAVYVGKRHLWFRKHVKSIALMFALMGSLFLLDSFTVSLFDSISLQNSSP PMTSSGVKGDRTAYANEEERSVQMHGRLQNLAYSALAEKEFKQDTSNFWEEPRKASLWKPCGDRKDAEKLGQPDKNNGYIMVSANGGLNQQRVAICNAIA LASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFMNIMKDEVNIVKELPSHLKSLDIDAIGSLITDADIVKEATPIDYLTKTLPLLLQNGVVHFLGFGN RLGFDPLPSKLQKLRCKCNFHALKFVPKIQEAGSLLIRRIRKNDAAQTTLDRQLFGEFLTGNPSNKHDSARGSSKYLALHLRFEVDMIAYSLCDFGGGQK ERRELQAYRESHFPMLMERLKHSMPISSSVLRNLGRCPLTPEEAALMLAGLGVKHGTYIYLASSHIYGGKFRMHSFTNLYPNLVTKETLLTPSELAPFRN FSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRTYYGGGHAPTLRPNKKRLAAILSENGTIGWNSFEDRVRKMIKDGQSVRIRGFGRSIYRQPRCPE CMCKTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29200			O-fucosyltransferase family pr...		Potri.004G058900 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.008G055700 [exp]	2.00	0.8427
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.010G193200 [exp]	7.41	0.7343
AT3G56250			unknown protein		Potri.013G083700 [exp]	8.71	0.8394
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.014G045200 [exp]	9.48	0.8235	Pt-CRK.1
AT1G68585			unknown protein		Potri.008G119300 [exp]	10.81	0.8065
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	12.24	0.7640
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.019G050700 [exp]	14.79	0.8307
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.007G134500 [exp]	16.88	0.7893	MYB.43
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	17.00	0.7947	PCBERp4
AT3G17900			unknown protein		Potri.008G194632 [exp]	17.86	0.8011

Compare expression of checked genes

Potri.004G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.