Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45780 837 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 630 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 629 / 0 NIK1 NSP-interacting kinase 1 (.1) AT1G60800 629 / 0 NIK3 NSP-interacting kinase 3 (.1) AT2G23950 571 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 554 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G71830 502 / 1e-171 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 492 / 1e-167 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 489 / 8e-167 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G10290 470 / 2e-159 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068700 [exp] 1127 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 660 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 656 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G043200 [exp] 650 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 645 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G110300 [exp] 630 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 614 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G179400 [exp] 572 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 543 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007292 [exp] 917 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 884 / 0 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030898 [exp] 649 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 648 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 647 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10005103 [exp] 639 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 624 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 615 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 565 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 559 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G059100.2 pacid=42794041 polypeptide=Potri.004G059100.2.p locus=Potri.004G059100 ID=Potri.004G059100.2.v4.1 annot-version=v4.1 ATGGCGGCCATTTTGTTCCACATCTTTTTAGCAGTCTTTTGGGTCCATTTTGCTCAAGCAACTGGTAGTCTTCTTTCTCCAAAGGGTGTTAACTATGAGG TGGCCGCATTGATGGCTGTGAAGAAAGAAATGAGAGATGAGTCCGGTGTTATGAACGGTTGGGATTTGAACTCTGTTGATCCTTGCACTTGGAATATGGT CGGTTGCTCTCCTGAAGGCTTCGTCTTCTCCCTGGAAATGGCAAGTGCAAGATTATCAGGAACTCTTTCGCCTAGTATCGCGAATTTGAGTCACCTAAGA ACAATGTTATTACAGAACAATCATTTATCTGGTCCCATTCCAGAAGAGATCGGAAAGCTCTCAGATCTTCAAACTCTTGACCTCTCAGGTAACCAGTTCG TTGGTGGTATTCCGAGCTCTTTGGGATTTCTGACCCATCTAAGTTACTTGCGACTCAGTAAAAACAAGTTAACTGGGCAGATTCCAAGACTGGTGGCCAA TCTTACTGGACTTTCATTCTTGGATTTATCATTTAACAATCTTAGTGGTCCAACTCCAAAAATATTAGCAAAAGGTTACAGTATTGCTGGGAATAGATAT CTTTGCACTTCCTCACATGCACAAAATTGCACGGGTATCTCAAATCCAGTGAACGAGACACTTTCATCTGAGCAAGCCAGAAGTCATCATCGGTGGGTGC TCTCTGTTGCCATAGGCATCAGCTGCACTTTTGTGATTTCTGTCATGCTGCTTGTCTGTTGGGTGCATTGGTATAGATCTCGTCTACTCTTCATATCATA TGTGCAACAAGATTATGAATTTGATATTGGTCATTTGAAGAGATTTTCTTTCCGTGAACTACAAATTGCTACAAACAACTTTAGTCCGAAAAATATCTTA GGGCAAGGTGGATATGGTGTGGTTTACAAAGGATGTCTCCCAAATAAAACTTTCATTGCAGTTAAAAGGCTGAAGGATCCAAATTTTACTGGAGAAGTGC AGTTTCAAACTGAAGTGGAAATGATTGGCTTGGCTTTACATAGAAACCTCTTATGTTTGTATGGCTTCTGCATGACACCTGATGAGAGGTTGCTTGTTTA TCCTTACATGCCAAATGGCAGTGTTGCTGACCGCCTGAGAGAGACCTGTCGAGAAAAACCTTCTTTAGATTGGAACAGACGGATACACATTGCCCTTGGG GCTGCCCGTGGACTTCTATACTTGCATGAACAATGCAATCCAAAGATAATTCACAGGGATGTTAAAGCTGCGAACATTTTACTTGATGAAGGTTTTGAAG CTGTAGTTGGGGACTTTGGTCTTGCTAAGTTGTTGGATCTTAGAGATTCACATGTGACAACTGCGGTGCGGGGGACTGTAGGACACATTGCACCCGAGTA TCTTTCAACTGGGCAATCATCTGATAAAACTGATGTTTTTGGATTTGGCATACTACTTTTGGAACTTATAACAGGGCAAAAGGCATTAGATGCTGGAAAT GGCCAGGTTCAGAAGGGAATGATTCTTGACTGGGTTAGAACTTTGCATGAGGAGAAGAGGTTGGAAGTGCTAGTGGATAGGGATCTGAAGGGATGTTTTG ATGTGTCCGAGCTGGAAAAAGCTGTGGATTTGGCTCTGCAGTGTACTCAGTCACATCCTAACCTTCGGCCAAAAATGTCAGAAGTCTTGAAGGTCCTAGA AGGTATTGTTGGGCAGCCTGCAATTGAGGAATCACAAGGTGCAACTAGTATTGGTGAGGCAAGGGCATGCAATTGCTCAAGGCATTGTAGCGATGTTCAT GAGGAATCTTCTTTCATCATTGAAGCAATGGAGCTTTCCGGACCTCGATAA
AA sequence Show only first row Show all	>Potri.004G059100.2 pacid=42794041 polypeptide=Potri.004G059100.2.p locus=Potri.004G059100 ID=Potri.004G059100.2.v4.1 annot-version=v4.1 MAAILFHIFLAVFWVHFAQATGSLLSPKGVNYEVAALMAVKKEMRDESGVMNGWDLNSVDPCTWNMVGCSPEGFVFSLEMASARLSGTLSPSIANLSHLR TMLLQNNHLSGPIPEEIGKLSDLQTLDLSGNQFVGGIPSSLGFLTHLSYLRLSKNKLTGQIPRLVANLTGLSFLDLSFNNLSGPTPKILAKGYSIAGNRY LCTSSHAQNCTGISNPVNETLSSEQARSHHRWVLSVAIGISCTFVISVMLLVCWVHWYRSRLLFISYVQQDYEFDIGHLKRFSFRELQIATNNFSPKNIL GQGGYGVVYKGCLPNKTFIAVKRLKDPNFTGEVQFQTEVEMIGLALHRNLLCLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRIHIALG AARGLLYLHEQCNPKIIHRDVKAANILLDEGFEAVVGDFGLAKLLDLRDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILLLELITGQKALDAGN GQVQKGMILDWVRTLHEEKRLEVLVDRDLKGCFDVSELEKAVDLALQCTQSHPNLRPKMSEVLKVLEGIVGQPAIEESQGATSIGEARACNCSRHCSDVH EESSFIIEAMELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45780			Leucine-rich repeat protein ki...		Potri.004G059100 [exp]	0	1
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.009G001500 [exp]	4.47	0.8532	AGO904
AT4G23930			Late embryogenesis abundant (L...		Potri.003G141200 [exp]	4.47	0.8256
AT5G45540			Protein of unknown function (D...		Potri.015G107800 [exp]	7.87	0.8541
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.007G009200 [exp]	9.21	0.8342
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	9.79	0.7765
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.005G210100 [exp]	10.67	0.7961
					Potri.018G101800 [exp]	13.49	0.8208
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	14.31	0.8014
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	15.87	0.8479
AT1G11915			unknown protein		Potri.004G007400 [exp]	19.39	0.8286

Compare expression of checked genes

Potri.004G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.