Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 107 / 2e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 102 / 3e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 96 / 4e-23 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 92 / 1e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 88 / 3e-20 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G08750 58 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G63780 56 / 2e-08 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 53 / 2e-07 RING/U-box superfamily protein (.1.2.3.4) AT5G18760 50 / 2e-06 RING/U-box superfamily protein (.1) AT2G45530 49 / 2e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068800 [exp] 436 / 4e-153 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 107 / 3e-27 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 102 / 2e-25 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 97 / 1e-23 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 97 / 1e-23 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 96 / 5e-23 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 95 / 2e-22 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G098900 [exp] 59 / 3e-09 AT5G08750 411 / 2e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.005G070100 [exp] 58 / 4e-09 AT5G08750 414 / 1e-144 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015273 [exp] 185 / 7e-56 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 177 / 3e-53 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 172 / 1e-51 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 102 / 3e-25 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 100 / 2e-24 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 99 / 5e-24 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 97 / 2e-23 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 97 / 3e-23 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 97 / 4e-23 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 96 / 4e-23 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.004G059200.2 pacid=42796613 polypeptide=Potri.004G059200.2.p locus=Potri.004G059200 ID=Potri.004G059200.2.v4.1 annot-version=v4.1 ATGGATCAAGACACACAAGGAAACGAAGGAATTATTGGGAATTTGGACCAAGTGTATCGGGGAAGGATTGTCAATGCCAGTGATTTGAGTGGAAATTCAA GCAATTTGGATAATGGGGTTGCCATAGAGACTTTAAAGGTAATAAATTCAGGAGAGAAAGTGGCTGCTGTGGTGGAAACTGGGGTTTTGAATGCCAGTAT TGAGGGGTTGGGATCCAGTGAGAGAGTGGCAAGTCAGGGAACAAGTGATAGGAAAAGAATTGAAGAGTCAATGAATGAAGGAACGGTCGCAAATACAATT GATATGGTTAATGGAGCTGTACTTGAGACTGTTATTGTGATGAATTCAGGGGCGACTTCAAGTGTTGATGGAGAAAATAAGGATTTGGGAGCAAAAAATG AGGAGTTGGGGCTCAGATGTGGAATGATAGATGAGGAAACACGTCATGGGCTTGGAGATGGTGAGGTATTAAATCAAGTTGAGCGAGGAAGAGGTTGGTA TTCGAGTAATTCTAGGGCTGTGCTTGAGACTCTGATCGCGATAGGTCCTGAAGAGAATGCGGGTATTAATGGAGGAAACCAAAGATTGGAACTCAGGGGC AATGAGATGAGGTTAAGTAAGGGGACAATGGACGAGTCAGAGAAGAAAGTGATCAAAGTGGGGAAGTCATCGTGTGTGGTTGATATGACGAGTGGTGGTG GCGGTGGAACAGGAGGAGGAGGTTTTAAGGATAATTGTGATGGAGAAAGGGTTTGTAGGATTTGTCACTTGAGTTCTGAGGGGTTGCTGGAAGCTACTGA CGCAATTGCTACTGCCACAACCAACTCCATGGATCTAATTCAGATTGGTTGTGGATGTAAAGATGATCTTGGCATTGCACATGTGTATTGTGCTGAAACA TGGTTTAAGCTAAAAGGAAACAGAATCTGTGAAATATGTGGAGAGACAGCAATGAATATCAAAGGTGTTGGGGAGAACCCTTTTCTGGAAAGGAGATTTA TCAGGAGCACTGGTTTCTCATCAGAGAGCAGCGGAGGGTGTTGGCGGGGACAGCCTTTCTGTAACTTCCTATTGGCATGCTTGGTAATAGCTTTTGTGCT TCCATGGTTTTTTAGGGTGAAAATGTTTTAG
AA sequence Show only first row Show all	>Potri.004G059200.2 pacid=42796613 polypeptide=Potri.004G059200.2.p locus=Potri.004G059200 ID=Potri.004G059200.2.v4.1 annot-version=v4.1 MDQDTQGNEGIIGNLDQVYRGRIVNASDLSGNSSNLDNGVAIETLKVINSGEKVAAVVETGVLNASIEGLGSSERVASQGTSDRKRIEESMNEGTVANTI DMVNGAVLETVIVMNSGATSSVDGENKDLGAKNEELGLRCGMIDEETRHGLGDGEVLNQVERGRGWYSSNSRAVLETLIAIGPEENAGINGGNQRLELRG NEMRLSKGTMDESEKKVIKVGKSSCVVDMTSGGGGGTGGGGFKDNCDGERVCRICHLSSEGLLEATDAIATATTNSMDLIQIGCGCKDDLGIAHVYCAET WFKLKGNRICEICGETAMNIKGVGENPFLERRFIRSTGFSSESSGGCWRGQPFCNFLLACLVIAFVLPWFFRVKMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	0	1
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	5.74	0.7831
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	6.00	0.7460
AT1G63840			RING/U-box superfamily protein...		Potri.003G130900 [exp]	7.00	0.7229
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	8.94	0.7579
AT5G11700			unknown protein		Potri.018G058300 [exp]	9.16	0.7478
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	9.21	0.6978
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	10.95	0.6358
AT1G35430			unknown protein		Potri.019G079800 [exp]	12.04	0.6772
AT1G22930			T-complex protein 11 (.1.2)		Potri.003G018500 [exp]	15.58	0.7200
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	16.00	0.6987

Compare expression of checked genes

Potri.004G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.