Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 1110 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 605 / 0 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 598 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 593 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 592 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 583 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 582 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 550 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 541 / 3e-180 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 532 / 3e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 609 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 607 / 0 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 592 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 592 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 584 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 578 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G215500 [exp] 575 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 575 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 574 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015225 [exp] 1087 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 625 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 619 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 612 / 0 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 597 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 595 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 593 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 586 / 0 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 563 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 558 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G059400.1 pacid=42794523 polypeptide=Potri.004G059400.1.p locus=Potri.004G059400 ID=Potri.004G059400.1.v4.1 annot-version=v4.1 ATGATGATTTTAATGGCCACAATCCTTCCACCAAAACTTTCTCTCCCTCTAAATAACAAAAAAAGCAGAGGAAAACACTCTTTCCACTCTAAATATGTGT TCTTTTCCAATAAACCATATCCAAAGTTTGCTCCTTTATCACCAAATTTACACTTTTCTTATGACACAGTATCCGTCTTTGCCTCACCAGCCCAATCCAA AGATAACAAAATCACTGATTGGAACACAAAAATCTATGAGGTATGTGAAATGGGAAATATTGATAAAGCAATAAAACTGCTTTATATGTCTCCAAAAACA GAAATTGAGTCAAGAACTTGTTGCTCAATATTGCAACTTTCTGCAGAACTTAAATCCTTACAAGATGGCAAGAAAGTTCATTCATTTATTTGTTCTAGTG GGATTTCAATTGACAGTGTTTTAGGATCAAAACTTGTATTTATGTATGTAACTTGTGGGGATTTAAGAGAAGGGAGGCTGATTTTTGATAAGATAAGAAA TGAGAAGGTTTTTCTTTGGAATCTAATGATGAATGGGTATACAAAGATTGGTGATTTTAAAGAGAGTGTCTCTTTATTTAGGCAGATGTTGGATTTGGGT GTTGAAGTCAACTCTCATACAGTTTCTTGTGTATTGAAGTGTTTTGCAGCTTTAGGCAGTGTAAAGGAAGGTAAATGGGTTCATGGGTTTTTGTTGAAAT TGGGTTTGGGTTCTTATAATGCTGTTGTTAATTCGCTCATTGCTTTTTACTTGAAGATTAGGAGAGTTGATGTTGCCCGTAAGTTGTTCGATGAATTGAG TAACAGAGATGTTATTTCATGGAATTCAATGATTAGTGGGTATGTGGCTAATGGTTTTTCTGAGAAAGGAGTTGAGCTTTTCAAAAAGATGCTATATTTG GGAGTTGATATGGATTTGGCTACAATGGTCAGTATTCTTCAAGCTTGTGCAAATTGTGGTGACGTTTCATTGGGTAGAGCAGTTCATGGTTCTGGAGTGA AGGCCTGTGTTCACTGGAAAACTACCTTTTGCAATACATTACTGGATATGTATGCCAAATGTGGTGTTTTGGATGGTGCTATTCGAGTTTTTGACTTGAT GAGTGTAAGAACTGTTGTGACTTGGACTTCATTGATTGCAGCTTATGCTCGAGAAGGTCTCTCTGATGAAGCTATTCGATTGTTCCATGAAATGGACAGG GAAGGTGTTAGCCCGGATATTTTTACTATCACAACGGTTCTTCATGCTTGTGCTTGTAATGGGTCACTGGAAAATGGCAAGGATGTGCACAATTACATTA GGGAAAATGATATGCAATCAAATATATTTGTGTGCAATGCTCTCATGGATATGTATGCAAAATGTGGAAGCATGGAAGATGCTAACTCAGTTTTTTTAGA AATGCCTGTAAAAGATATCATCTCATGGAACACCATGATCGGAGGTTACTCAAAAAACAGTCTACCCAATGAAGCTCTTAGTCTGTTTGGTGATATGGTG TTAGAAATGAAACCTGATGGCACGACATTGGCATGTATTCTTCCCGCTTGTGCCAGCCTAGCTTCTCTAGATAGAGGCAAAGAGGTTCATGGTCATATAT TGAGAAATGGATTTTTTTCTGATCAACAGGTTGCCAACGCACTTGTTGACATGTATGTGAAGTGTGGGGTCCCGGTTCTTGCACGGTTGCTCTTTGATAT GATTCCTACAAAGGATTTGATCACATGGACAGTTATGATTGCTGGATATGGCATGCATGGATTTGGGAACAATGCTATCACTACCTTTAATGAGATGAGG CAAGCTGGTATTGAGCCTGATGAAGTGTCCTTCATTTCAATACTGTATGCTTGCAGTCATTCTGGATTGCTTGACGAAGGATGGAGATTCTTTAACGTTA TGCAAGATGAATGCAATGTCAAGCCAAAGCTGGAGCATTATGCTTGTATAGTGGATCTTTTAGCTCGCAGTGGGAAACTAGCCATGGCATACAAATTCAT AAAATCAATGCCAATTGAACCTGATGCCACAATCTGGGGAGCACTGCTCTCCGGGTGTAGGATTCACCATGATGTCAAATTAGCTGAGAAAGTTGCAGAA CACGTCTTTGAACTTGAACCAGAGAACACGGGATACTATGTACTTTTAGCAAATACCTATGCCGAGGCAGAGAAATGGGAAGAGGTGAAAAAGCTGAGAC AAAAGATTGGTCGGCGGGGTTTAAAGAAGAACCCAGGCTGCAGTTGGATAGAAGTCAAGAGCAAAGTTCACATCTTTCTTGCTGGAAATAGTTCACACCC ACAAGCCAAAAAGATAGAGGTTTTGTTGAAGAGGTTGAGATCAAAGATGAAGGAAGAAGGTTACTTTCCTAAAACAAGATATGCTTTGATCAACGCAGAT AGCCTGCAGAAGGAAACGGCTCTCTGTGGGCATAGTGAGAAATTAGCCATGGCTTTTGGAATATTGAACTTGCCACCTGCGAGAACAATACGGGTATCAA AGAACCTGAGAGTATGTGGTGACTGTCATGAGATGGCAAAGTTCATTTCCAAGACATTAGGAAGGGAGATTGTCTTGAGGGATTCTAATCGCTTTCACCA TTTCAAGGATGGCGTTTGTTGTTGCAGAGGTTTCTGGTGA
AA sequence Show only first row Show all	>Potri.004G059400.1 pacid=42794523 polypeptide=Potri.004G059400.1.p locus=Potri.004G059400 ID=Potri.004G059400.1.v4.1 annot-version=v4.1 MMILMATILPPKLSLPLNNKKSRGKHSFHSKYVFFSNKPYPKFAPLSPNLHFSYDTVSVFASPAQSKDNKITDWNTKIYEVCEMGNIDKAIKLLYMSPKT EIESRTCCSILQLSAELKSLQDGKKVHSFICSSGISIDSVLGSKLVFMYVTCGDLREGRLIFDKIRNEKVFLWNLMMNGYTKIGDFKESVSLFRQMLDLG VEVNSHTVSCVLKCFAALGSVKEGKWVHGFLLKLGLGSYNAVVNSLIAFYLKIRRVDVARKLFDELSNRDVISWNSMISGYVANGFSEKGVELFKKMLYL GVDMDLATMVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAIRVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR EGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMR QAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAE HVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINAD SLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	1.00	0.9511
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	6.70	0.9421
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	10.95	0.9297
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	10.95	0.9437
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	11.66	0.9291
AT4G24500			hydroxyproline-rich glycoprote...		Potri.005G153300 [exp]	11.83	0.9241
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	12.96	0.9322
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	13.26	0.9388
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	16.73	0.9330
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	18.49	0.9322

Compare expression of checked genes

Potri.004G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.