Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18760 375 / 7e-127 AtRLP51 receptor like protein 51 (.1) AT5G45770 295 / 4e-96 AtRLP55 receptor like protein 55 (.1) AT3G12610 88 / 9e-19 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT1G71400 87 / 5e-18 AtRLP12 receptor like protein 12 (.1) AT1G73066 86 / 1e-17 Leucine-rich repeat family protein (.1) AT3G47580 86 / 2e-17 Leucine-rich repeat protein kinase family protein (.1) AT1G08590 85 / 2e-17 Leucine-rich receptor-like protein kinase family protein (.1) AT1G58190 85 / 3e-17 AtRLP9 receptor like protein 9 (.1.2) AT2G25790 85 / 3e-17 Leucine-rich receptor-like protein kinase family protein (.1) AT5G51350 85 / 3e-17 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069500 [exp] 595 / 0 AT4G18760 375 / 4e-127 receptor like protein 51 (.1) Potri.002G008100 [exp] 95 / 2e-20 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 94 / 4e-20 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008175 [exp] 93 / 7e-20 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.016G092700 [exp] 92 / 1e-19 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G007600 [exp] 91 / 5e-19 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.014G147300 [exp] 91 / 5e-19 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G133100 [exp] 90 / 7e-19 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G027400 [exp] 89 / 1e-18 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007294 [exp] 468 / 3e-163 AT4G18760 391 / 1e-133 receptor like protein 51 (.1) Lus10015226 [exp] 407 / 1e-139 AT4G18760 401 / 2e-137 receptor like protein 51 (.1) Lus10005430 [exp] 258 / 6e-84 AT4G18760 293 / 3e-98 receptor like protein 51 (.1) Lus10029243 [exp] 122 / 2e-33 AT4G18760 168 / 2e-51 receptor like protein 51 (.1) Lus10039985 [exp] 115 / 9e-31 AT5G45770 120 / 3e-33 receptor like protein 55 (.1) Lus10037840 [exp] 93 / 7e-20 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 91 / 3e-19 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 91 / 4e-19 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005017 [exp] 91 / 6e-19 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10037705 [exp] 88 / 7e-19 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G059500.1 pacid=42794352 polypeptide=Potri.004G059500.1.p locus=Potri.004G059500 ID=Potri.004G059500.1.v4.1 annot-version=v4.1 ATGTCACCACCTCCACCACCCCTCCTCCTCACTCTCCTCCTCCTCTTCCTCATCTCCGCCACCACCACTGAAGCTGCCTCTGCCTCTCCCATTGCCACTC TTCCACCCTCTCCCTCCCCAGCCTCCTCTCCTACTGCACCCACCACCAAAACTCCCTCCCCCACCTCCTCTCCTACTCCACCGACCACCAAATCCCCCTT TCCCTCCATTAACTCCACTTTAAACCCCAAACAACTTAGAGCCCTCCAATCTCTAGACATCCCTACAGCTAAAGATCCTTGCATACAACCTTCTCCTCAC AACGCCACCATGTGTGACTCTTCTTCCCCCTTTCGCCAACTAGTCTCGCTTCACCTGTCCAACTGCTCCTCTGACCTCTCTCTTTCTTACACTGCCCTTA AATCCCTCTCCACTCTTCAATCTCTCTCTTTCACCAACTGCCCTGTTACCCCTATTAGATTCCCTTTAGATCTTGCCATCTCTCTTCATTCTTTCACTTG CATTCACTCTCTTAAACACCTCACTGGTATCGGGCTCTCTCGCTTTGTCAATCTCACTGATCTCACTGTAAGTAATGTGCCAGTCAATACTAGTGGTCTT TATGCGGTTCTTGGTAATATGCGTAAGCTTAGGTCTGTTACTATCTCAAATGCTAATGTCACTGGCTACATACCAAAACATCTGCTTTTCAATCTTACCC ATGTTGATTTTTCAGGTAATAGGCTTAAAGGAAAGATACCCAGTTCCATTACACTTCTTGAAAATCTTGAAAGTCTCAATCTTTACTCAAATGCACTTAC TGGGGCAATCCCTGATAATCTTGGTGACTTGATTTCACTAAAGAATGTGTCTTTAGGCGCTAACTCTTTATCTGGGGCGATCCCGGATTCAATGTCAGCA ATTCCTGATTTAGCTTATGTTGATCTGAGTTCAAATCAGTTGAATGGGACAGTACCAAAGTTTTTTGCAGAAATGAAGAAATTGAGGTACTTGAATCTTG AGAACAATGAGTTTCATGGTGTTTTGCCTTTCAATCTTACTTTTATGAAGAGATTAGCTGTGTTTAAAGTTGGTGGAAACAGCAATTTGTGTTACAATCA TACGATTTTGTCATCAAAATTGAAGCTTGGAATTGCTCCTTGTGATAAGCATGGATTGCCATTGTCACCACCACCTGCAAAGGATAGTTCATCAGGAGGT GATAGTGAGAGTGATTCATCAGATTATAATGATGAAGGTGGTGATTCTAACAGCAAGAAAGAGGGTCATCACGGACCTAATAAGGTTGTTCTTGGTGTGG CAATTGCGCTTTCCTCTATAGTCTTCCTAATTGTCTTCCTTATTCTTCTCTCCAAAAGATGTGGTTAA
AA sequence Show only first row Show all	>Potri.004G059500.1 pacid=42794352 polypeptide=Potri.004G059500.1.p locus=Potri.004G059500 ID=Potri.004G059500.1.v4.1 annot-version=v4.1 MSPPPPPLLLTLLLLFLISATTTEAASASPIATLPPSPSPASSPTAPTTKTPSPTSSPTPPTTKSPFPSINSTLNPKQLRALQSLDIPTAKDPCIQPSPH NATMCDSSSPFRQLVSLHLSNCSSDLSLSYTALKSLSTLQSLSFTNCPVTPIRFPLDLAISLHSFTCIHSLKHLTGIGLSRFVNLTDLTVSNVPVNTSGL YAVLGNMRKLRSVTISNANVTGYIPKHLLFNLTHVDFSGNRLKGKIPSSITLLENLESLNLYSNALTGAIPDNLGDLISLKNVSLGANSLSGAIPDSMSA IPDLAYVDLSSNQLNGTVPKFFAEMKKLRYLNLENNEFHGVLPFNLTFMKRLAVFKVGGNSNLCYNHTILSSKLKLGIAPCDKHGLPLSPPPAKDSSSGG DSESDSSDYNDEGGDSNSKKEGHHGPNKVVLGVAIALSSIVFLIVFLILLSKRCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	0	1
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	1.41	0.9297
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	2.00	0.9258	CYCD3.4
AT1G07220			Arabidopsis thaliana protein o...		Potri.001G252000 [exp]	2.00	0.9272
AT4G21895			DNA binding (.1)		Potri.004G017000 [exp]	2.23	0.9161
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	5.47	0.9271	Pt-FAH1.1
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	6.32	0.8978
AT2G29560		ENOC	cytosolic enolase (.1)		Potri.009G040700 [exp]	6.32	0.8801
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	8.66	0.8837	PAA1.4
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	9.00	0.8751
AT3G18800			unknown protein		Potri.019G006500 [exp]	10.90	0.8828

Compare expression of checked genes

Potri.004G059500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.