Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 99 / 7e-25 unknown protein AT2G31560 42 / 0.0001 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069900 [exp] 287 / 7e-99 AT2G42760 89 / 4e-21 unknown protein Potri.006G129800 [exp] 82 / 2e-18 AT2G42760 65 / 4e-12 unknown protein Potri.007G126700 [exp] 44 / 2e-05 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007299 [exp] 120 / 2e-33 AT2G42760 115 / 7e-31 unknown protein Lus10005429 [exp] 107 / 4e-28 AT2G42760 111 / 1e-29 unknown protein Lus10015228 [exp] 103 / 1e-26 AT2G42760 115 / 5e-31 unknown protein Lus10015227 [exp] 85 / 7e-20 AT2G42760 93 / 1e-22 unknown protein Lus10029248 [exp] 77 / 1e-16 AT2G42760 61 / 6e-11 unknown protein Lus10019924 [exp] 61 / 9e-11 AT2G42760 56 / 7e-09 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [poplar] [flax] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Potri.004G059900.1 pacid=42794889 polypeptide=Potri.004G059900.1.p locus=Potri.004G059900 ID=Potri.004G059900.1.v4.1 annot-version=v4.1 ATGGACGCAACAGAAGTTATTGAGTTCTTTGATTCATGCTGGTTTGAGATGGAAATATTCAAGAAACAACCAAGTTTAGCTAAATCGTCCAGTGTAGAGA CAAACCCACATCAAGAAAATCAAGAAAAGGCTCCAAAACCAGAGATCTCGAGAGTGCCAACAATCATCACAAGGTCTATGAGTGAAGATCTGTGCTCCAA AACAAGCCTCAGTTCGGGCTTTTCTCTCTCTCCAGATTCAGTTCTCCGCGCACCAAAGCTCCACGCCATCCTCTCAGGAAAAGAAGTCAAAGAGGAAGAA TACTCAACACCAACAGAGAGAGTATATATTCTGGAGTCACCTAAAAAGAAAGTTTCGAGGGGGAGAAAGGGAAAGAAAGTGACAAGCAAGAGCTTGTCAG AACTGGAATATGAAGAGTTAAGAGGATTTATGGATTTGGGATTTGTCTTCTCAGAAGAAGATAAAGATTCAAACTTGGCTTCAATAATTCCAGGATTGCA TAGACTTGGTAAAAAAGATGAGGAAGAAGCCATTCTTGATGAGCCTACAGTATGTAGGCCTTATTTATCTGAAGCATGGGAAGTTCTGGAAAAGAAGAGG AAAGAGGAACCATTGATGAATTGGAGAATTCCTGCTTTGGGCAACGAGATTGACATGAAAGATAATCTTAGATGGTGGGCTCACACCGTTGCTTCAACTG TTAGATAA
AA sequence Show only first row Show all	>Potri.004G059900.1 pacid=42794889 polypeptide=Potri.004G059900.1.p locus=Potri.004G059900 ID=Potri.004G059900.1.v4.1 annot-version=v4.1 MDATEVIEFFDSCWFEMEIFKKQPSLAKSSSVETNPHQENQEKAPKPEISRVPTIITRSMSEDLCSKTSLSSGFSLSPDSVLRAPKLHAILSGKEVKEEE YSTPTERVYILESPKKKVSRGRKGKKVTSKSLSELEYEELRGFMDLGFVFSEEDKDSNLASIIPGLHRLGKKDEEEAILDEPTVCRPYLSEAWEVLEKKR KEEPLMNWRIPALGNEIDMKDNLRWWAHTVASTVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42760			unknown protein		Potri.004G059900 [exp]	0	1
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	5.29	0.7014
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.001G136200 [exp]	7.41	0.7330
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G100300 [exp]	11.66	0.7685
AT5G57510			unknown protein		Potri.006G273566 [exp]	17.00	0.7104
AT1G26580			unknown protein		Potri.017G091900 [exp]	48.34	0.6349
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	50.73	0.6363
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	53.96	0.7117	DREB47
AT5G57510			unknown protein		Potri.006G273500 [exp]	56.39	0.7083
AT2G45360			Protein of unknown function (D...		Potri.003G115200 [exp]	78.42	0.7008
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G005900 [exp]	80.87	0.6419

Compare expression of checked genes

Potri.004G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.