Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 671 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 645 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 627 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 620 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 619 / 0 EFR EF-TU receptor (.1) AT2G24130 444 / 1e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 446 / 1e-138 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 441 / 3e-138 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 424 / 6e-131 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 419 / 3e-130 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037400 [exp] 1588 / 0 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 729 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 727 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 724 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 722 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 721 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 714 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 714 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 710 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009394 [exp] 944 / 0 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019525 [exp] 909 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043368 [exp] 898 / 0 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 700 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 698 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 697 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 697 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 695 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 693 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 691 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G060100.1 pacid=42796325 polypeptide=Potri.004G060100.1.p locus=Potri.004G060100 ID=Potri.004G060100.1.v4.1 annot-version=v4.1 ATGGTTTTCTTCCTTTTTAGTGCCCTCAAAAACCAGGAAGTTATGGCTTCAAAATTGCTTTTTCGTTGTGTTGCTGTTTTAGTTCTTATATTATCATCCC AAAATGCACTTCAAGTATTGGATGCTGCTGTGCCGGGCCTCTTCACTGACAAGGAAGCTCTACTTTCTTTTAAATCTCAGGTAGTCGTTGATCCTTCAAA TACTCTTTCCTCGTGGAACGACAACTCCAGCCCCTGTAACTGGACTCGTGTTGACTGTAGCCAGGTGCATCAAAGAGTCATTGGCCTTGATTTGTCTGGC CTTAGATTAACAGGTTCCATTAGCCCACATATTGGAAACCTATCCTTTCTTCGCTCTCTTCATCTACAGGAGAACCAATTTACAGGAGTTATTCCTGATC AAATTGGTGCTCTTTTCCGTTTGAAGGTCCTTAATATGAGCTTTAACACTATCAATGGCCCAATTCCTTCGAACATAACCAATTGCTTAAATCTCCAGAT CCTGGACTTGATGCAAAATGAGATCTCAGGAGCAATTCCAGAGGAACTCAGCAACCTGAAAAGCCTTGAAATCCTCAAGCTGGGTGGAAACGAGCTCTGG GGTATGATTCCACCCGTCATTGCAAACATTTCCTCTCTCCTCACCCTAGATTTAGTCACCAATAATCTTGGTGGAATGATCCCTGCCGATTTGGGTCGTC TTGAGAACTTAAAACATCTTGACCTTAGTATCAATAATCTCACCGGCGATGTTCCTCTATCCCTGTACAACATTTCTTCTTTGGTTTTCCTCGCTGTTGC TTCAAACCAACTGCGAGGTCAAATTCCAATAGATGTTGGAGATAGACTCCCAAATCTTTTAAGCTTCAATTTTTGCATAAACAAATTTAATGGTTCAATT CCATGGTCTTTGCATAATCTTACAAACATGCAGAGCATCCGTATGGCAGACAATCTTTTCAGTGGATCAGTGCCACCACGACTTAGAAATCTTCCCAAAT TGACATTGTACAATATTGGCGGCAATCAGATAAAAAGTTCTGGTGATGAGGGTCTCGATTTTCTCTCTTCTTTCACAAACAGTAGCTATCTGAAATTTCT TGCCATCGATGGCAATCTTCTGGAGGGTCTTATTCCAGAATCCATTGGAAATCTCTCGAGATCTCTTCGAAATTTATACTTGGGAAGGAATCAAATATAT GGAAGTATACCTGCCTCAATCAGACATCTTAGCAGCTTGGCTTTGCTAAATATAAACTATAATCATGTTTCTGGTGAAATTCCACCAGAAATTGGCGAGC TTACAGATCTGCAGGAGTTGCATTTGGCTGCAAATAAGATATCGGGCAGAATTCCGGACTCTCTTGGAAACCTCCAAAAACTCATTAAAATTAATCTATC TGCCAACGAGTTGGTTGGAAGACTGCCCACAACTTTTGTTAATTTCCAGCAATTGCAGTCCATGGACCTATCCAGCAACAGGTTCAACGGAAGCATACCA AAAGAAATTTTCAATCTCTCCAGTTTGAGTGCAACTCTGAACCTGTCCAGTAACCAGCTGACAGGTCCTTTGCCTCAAGAGATCCGGAGGCTCGAAAATG TTGCAGCTGTTGATTTTTCTCACAATTATTTGTCTGGAAGCATCCCAGATACAATTGGAAGCTGTAAGAGTTTGGAGGAGTTATTCATGGGCAACAATAT GTTCTCTGGTTCCATTCCGGCTACTCTAGGAGATGTGAAGGGTTTGGAAATCCTTGACCTCTCTTCGAACCAAATATCAGGCACAATACCCCAAACTCTT GAAAACTTGCAGGCCCTTCTCTTGTTGAACCTTTCATTCAACAACCTTGAAGGACTTCTTCCCAAGGAAGGAGCCTTTAGAAATCTTTCTAGAATTCATG TGGAAGGGAATTCGAAACTTTGCTTGGATTTATCTTGTTGGAACAATCAACATCGTCAAAGAATATCCACTGCAATTTATATTGTCATTGCCGGTATAGC CGCGGTTGCAGTATGCTCAGTGATAGCAGTTTTTCTGTGCGTAAGAAAAAGAAAAGGAGAAATTATGCCGAGGTCAGACTCAATTAAGCTGCAGCATCCC ACAATCTCTTATGGAGAACTTCGTGAGGCAACTGGGAGTTTTGACGCTGGAAATCTGATAGGGAAGGGCAGTTTTGGGTCAGTTTACAAAGGTGAACTTA GGGATGCGACTGTTGTGGCAGTTAAGGTGCTTGACAGCGAGAAGTATGGATCCTGGAAAAGTTTTTTGGCTGAGTGCGAGGCTTTGAAGAATGTAAGGCA TCGGAATCTCATTAAACTCATCACCTCATGCTCAAGTATGGATAATAGGGGTTTACAATTTGTGGCTTTGGTTTATGAGTACATGCATAATGGGAGCTTG GAAGAATGGATTAAGGGAAGTAGAAGGCGATTAGATGGAGGCTTGTTGAATATTTTGGAGAGGTTAAATGTGGCAATCGATGTTGCTTGTGCTGTGGATT ACCTGCACCATGACTGTGAAGTTCCAGTAGTTCACTGTGATTTGAAACCAAGTAATGTGCTTGTTGACAAAGACATGACTGCAAAGGTGGGAGACTTTGG TTTGGCTAAATTGCTAGCAGAGAGAGGAGCTGATAAACAGTCAATAAGTTGCACAGGTGGCCTCAGGGGCTCTGTAGGATACATTCCTCCAGAATATGGT TTAGGATTGAAAGCAACAACTTCGGGAGATGTATACAGCTATGGAGTTGTGCTGCTAGAGCTGTTCACCGGGAAGAGCCCAACACATGAAATCTTTTCTC GAGATTTAAGCCTAATCAAGTGGGTGAAGTCAGCTTTCCCTGCCAACATAGAAGAAGTAGTGGACCCTGAGCTACTCTTATCAATCAAAGATTTTCACCA TGGCGCTCAATTCGAGAGCCCTGAAAAACAGCATGAATGCTTGATTGCTATCCTTGGCGTCGGGCTATCCTGCACTGTCGAATCTCCTGGTCAGCGAATT ACCATGAGGGACTCTCTTCACAAGCTGAAAAAGGCTAGAGACACCCTTCTCAAACCATAG
AA sequence Show only first row Show all	>Potri.004G060100.1 pacid=42796325 polypeptide=Potri.004G060100.1.p locus=Potri.004G060100 ID=Potri.004G060100.1.v4.1 annot-version=v4.1 MVFFLFSALKNQEVMASKLLFRCVAVLVLILSSQNALQVLDAAVPGLFTDKEALLSFKSQVVVDPSNTLSSWNDNSSPCNWTRVDCSQVHQRVIGLDLSG LRLTGSISPHIGNLSFLRSLHLQENQFTGVIPDQIGALFRLKVLNMSFNTINGPIPSNITNCLNLQILDLMQNEISGAIPEELSNLKSLEILKLGGNELW GMIPPVIANISSLLTLDLVTNNLGGMIPADLGRLENLKHLDLSINNLTGDVPLSLYNISSLVFLAVASNQLRGQIPIDVGDRLPNLLSFNFCINKFNGSI PWSLHNLTNMQSIRMADNLFSGSVPPRLRNLPKLTLYNIGGNQIKSSGDEGLDFLSSFTNSSYLKFLAIDGNLLEGLIPESIGNLSRSLRNLYLGRNQIY GSIPASIRHLSSLALLNINYNHVSGEIPPEIGELTDLQELHLAANKISGRIPDSLGNLQKLIKINLSANELVGRLPTTFVNFQQLQSMDLSSNRFNGSIP KEIFNLSSLSATLNLSSNQLTGPLPQEIRRLENVAAVDFSHNYLSGSIPDTIGSCKSLEELFMGNNMFSGSIPATLGDVKGLEILDLSSNQISGTIPQTL ENLQALLLLNLSFNNLEGLLPKEGAFRNLSRIHVEGNSKLCLDLSCWNNQHRQRISTAIYIVIAGIAAVAVCSVIAVFLCVRKRKGEIMPRSDSIKLQHP TISYGELREATGSFDAGNLIGKGSFGSVYKGELRDATVVAVKVLDSEKYGSWKSFLAECEALKNVRHRNLIKLITSCSSMDNRGLQFVALVYEYMHNGSL EEWIKGSRRRLDGGLLNILERLNVAIDVACAVDYLHHDCEVPVVHCDLKPSNVLVDKDMTAKVGDFGLAKLLAERGADKQSISCTGGLRGSVGYIPPEYG LGLKATTSGDVYSYGVVLLELFTGKSPTHEIFSRDLSLIKWVKSAFPANIEEVVDPELLLSIKDFHHGAQFESPEKQHECLIAILGVGLSCTVESPGQRI TMRDSLHKLKKARDTLLKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G060100 [exp]	0	1
					Potri.005G059900 [exp]	2.44	0.9404
					Potri.017G111100 [exp]	3.74	0.9465
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.001G192100 [exp]	4.47	0.9190
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	7.74	0.9288
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.002G145251 [exp]	9.53	0.9158
					Potri.012G120584 [exp]	10.09	0.9241
AT3G60690			SAUR-like auxin-responsive pro...		Potri.002G145300 [exp]	13.22	0.9281	SAUR20
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	13.26	0.9236
AT5G24010			Protein kinase superfamily pro...		Potri.005G143700 [exp]	13.67	0.9185
					Potri.017G110900 [exp]	19.89	0.9060

Compare expression of checked genes

Potri.004G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.