Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29270 68 / 6e-15 unknown protein AT2G40435 62 / 1e-12 unknown protein AT3G56220 57 / 1e-10 bHLH transcription regulators (.1) AT3G01990 39 / 0.0008 ACR6 ACT domain repeat 6 (.1) AT5G57150 39 / 0.0009 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070000 [exp] 198 / 5e-66 AT1G29270 75 / 2e-17 unknown protein Potri.013G154100 [exp] 64 / 1e-13 AT2G40435 126 / 9e-38 unknown protein Potri.019G126800 [exp] 62 / 2e-12 AT2G40435 144 / 1e-44 unknown protein Potri.016G132600 [exp] 61 / 3e-12 AT2G40435 155 / 2e-49 unknown protein Potri.006G106900 [exp] 50 / 4e-08 AT2G40435 150 / 4e-47 unknown protein Potri.T124144 [exp] 46 / 3e-06 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 46 / 4e-06 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 40 / 0.0002 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.006G074600 [exp] 39 / 0.0006 AT5G57150 168 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029251 [exp] 137 / 6e-42 AT2G40435 91 / 5e-24 unknown protein Lus10007304 [exp] 128 / 2e-38 AT1G29270 97 / 4e-26 unknown protein Lus10010217 [exp] 50 / 4e-08 AT2G40435 152 / 1e-47 unknown protein Lus10017415 [exp] 47 / 7e-07 AT2G40435 146 / 3e-45 unknown protein Lus10016151 [exp] 45 / 7e-06 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10025257 [exp] 42 / 4e-05 AT2G40435 134 / 2e-40 unknown protein Lus10009089 [exp] 41 / 0.0001 AT2G40435 129 / 2e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G060800.2 pacid=42795221 polypeptide=Potri.004G060800.2.p locus=Potri.004G060800 ID=Potri.004G060800.2.v4.1 annot-version=v4.1 ATGGTGGCTAGGTTGCAAAGGAGAGCAGCGATGGGCAGAAGGCTCCACGTTCTAAGGACCCTCACCTGCTCCAAATCCGTGCAAAGGAAGTCTGTCATCA TGGATGCTCTTCTGTACATTTACAAGCTCAAGCTCAAACTGGAGGCAATCAAAAGGGAACTTGCAAACTTAGTTGCTATAAAAAGAGAATACTTAAGTCT AATGAAGCAACTCCAGTTGCCTAAGAAGGAGGTCAAGGTAGAGAAGGCTGAGCAAGGACTTCTAGTAAGGGTGACATGCGAGAAGGGAGGAGATAAACTA GTTTCAATCTTGGAGGTCTTCGAAGAAATGGGCCTTGTTATATTGAATGCTAGGGTCTCAAGCAATTTGTTCTTCGCTATGGAAGCCATTGTTGTAGCTG ATCAAGAACAACATGCTCTGCATGTGAAAAGTATTACTCAAGCGGTTACTAAGGCCATTGAAAGACAATAG
AA sequence Show only first row Show all	>Potri.004G060800.2 pacid=42795221 polypeptide=Potri.004G060800.2.p locus=Potri.004G060800 ID=Potri.004G060800.2.v4.1 annot-version=v4.1 MVARLQRRAAMGRRLHVLRTLTCSKSVQRKSVIMDALLYIYKLKLKLEAIKRELANLVAIKREYLSLMKQLQLPKKEVKVEKAEQGLLVRVTCEKGGDKL VSILEVFEEMGLVILNARVSSNLFFAMEAIVVADQEQHALHVKSITQAVTKAIERQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29270			unknown protein		Potri.004G060800 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Potri.009G131000 [exp]	4.69	0.8376
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	5.47	0.8403
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Potri.011G064100 [exp]	6.00	0.8409
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	7.54	0.8725
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	12.96	0.8208	GLP10.2
AT1G17030			unknown protein		Potri.004G062000 [exp]	13.41	0.8570
AT5G12260			unknown protein		Potri.009G066900 [exp]	13.56	0.8782
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	17.32	0.8369
AT1G15370			SNARE-like superfamily protein...		Potri.001G193100 [exp]	21.79	0.8580
AT5G24580			Heavy metal transport/detoxifi...		Potri.012G007300 [exp]	24.37	0.8018

Compare expression of checked genes

Potri.004G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.