Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29280 247 / 3e-82 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 195 / 1e-61 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 137 / 7e-38 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 133 / 3e-36 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT4G01250 119 / 4e-32 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 115 / 3e-30 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT5G45050 114 / 2e-28 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G30590 110 / 6e-28 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G23320 108 / 8e-28 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G24240 108 / 2e-27 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070100 [exp] 423 / 1e-151 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.011G157100 [exp] 137 / 2e-37 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 135 / 4e-37 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.002G195300 [exp] 123 / 7e-34 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.014G119800 [exp] 123 / 9e-34 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) Potri.004G072000 [exp] 124 / 5e-33 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.002G164400 [exp] 121 / 2e-32 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.017G149000 [exp] 120 / 1e-31 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.014G090300 [exp] 118 / 4e-31 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005428 [exp] 234 / 2e-77 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10015229 [exp] 224 / 7e-73 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 208 / 5e-67 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10007305 [exp] 206 / 8e-67 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10038426 [exp] 134 / 1e-37 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10007907 [exp] 119 / 3e-31 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 113 / 3e-30 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10041600 [exp] 113 / 2e-29 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10027538 [exp] 114 / 3e-29 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10039295 [exp] 112 / 5e-29 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G060900.1 pacid=42794759 polypeptide=Potri.004G060900.1.p locus=Potri.004G060900 ID=Potri.004G060900.1.v4.1 annot-version=v4.1 ATGGATAGTAGGTTCATCATCAACCCATTAATATGTGAGCAAGAAGAAAATGACAATAGTACTCAAGAAAGTGGTCCAGAATCATCTCCTTCTAACGATA TGAAGATGGCTTCCACTTCCTCCCCAAAAAGAAGCAAGAAGGCCATGCAAAAAAGAATAGTCTCAGTACCAATCAAGGACTTAGAAGGCCCAAGGCTGAA GGGTGAAAATGCTTCACCACCGTCTGATTCCTGGGCTTGGAGAAAGTATGGCCAAAAACCCATCAAAGGCTCGCCTTACCCCAGAGGATACTATAGGTGT AGTAGTTCAAAGGGTTGTCCAGCTAGAAAACAAGTAGAGAGGAGCAAGCTGGACCCAACAATGCTAGTGGTCACCTACTCCTGTGAGCACAACCACCCTT GGCCACCTCCTTCTAGAAGTACCCACCACCACAACTCCTCTCCAAAACACAACACCACCAAACCTGAAGTCTCCGCAACCCAACCTGAAAACCCAGAATC TGAACCTGAAGAAAAGTTCACGGATCTTGGAAACGGCGAGCCGCTTATATCTAACACTACAACTTCAGATGAGTTTTCGTGGTTTGGTGTCATGGAGACA ACCTCTTCAACTATACTTGAGACGCCCATTTTTGCAGAGGCAGAGGCGGATGCTGACATGGCATCGATGTTTTTCCCGATGAGAGAGGAGGACGAGTCGT TGTTTGCCGATCTTGGAGAGTTGCCGGAGTGCTCGTCGGTGTTCAGGCACCACCGGAGAGGTGTTGGACCACAGGTACAGACGTGCTAA
AA sequence Show only first row Show all	>Potri.004G060900.1 pacid=42794759 polypeptide=Potri.004G060900.1.p locus=Potri.004G060900 ID=Potri.004G060900.1.v4.1 annot-version=v4.1 MDSRFIINPLICEQEENDNSTQESGPESSPSNDMKMASTSSPKRSKKAMQKRIVSVPIKDLEGPRLKGENASPPSDSWAWRKYGQKPIKGSPYPRGYYRC SSSKGCPARKQVERSKLDPTMLVVTYSCEHNHPWPPPSRSTHHHNSSPKHNTTKPEVSATQPENPESEPEEKFTDLGNGEPLISNTTTSDEFSWFGVMET TSSTILETPIFAEAEADADMASMFFPMREEDESLFADLGELPECSSVFRHHRRGVGPQVQTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.004G060900 [exp]	0	1
AT3G14280			unknown protein		Potri.003G072400 [exp]	2.00	0.9317
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033000 [exp]	2.82	0.9244
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	3.46	0.9261	NHL25.1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	4.47	0.9215
					Potri.011G047200 [exp]	5.29	0.9014
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033200 [exp]	6.48	0.9047
AT4G40020			Myosin heavy chain-related pro...		Potri.005G072400 [exp]	6.70	0.8474
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	7.74	0.8977
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113500 [exp]	8.00	0.8824
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	9.00	0.9002	Pt-WRKY11.1

Compare expression of checked genes

Potri.004G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.