Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18810 54 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070400 [exp] 132 / 6e-41 ND / Potri.001G393001 [exp] 80 / 1e-20 ND / Potri.001G389150 [exp] 66 / 3e-15 ND / Potri.011G108700 [exp] 64 / 4e-14 AT4G15140 42 / 9e-06 unknown protein Potri.006G008000 [exp] 42 / 2e-05 AT4G15140 86 / 3e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007307 [exp] 101 / 2e-28 ND / Lus10029254 [exp] 103 / 5e-28 ND / Lus10010477 [exp] 39 / 0.0003 AT4G15140 73 / 1e-16 unknown protein Lus10003804 [exp] 38 / 0.0004 AT4G15140 85 / 5e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G061100.3 pacid=42795722 polypeptide=Potri.004G061100.3.p locus=Potri.004G061100 ID=Potri.004G061100.3.v4.1 annot-version=v4.1 ATGGATATCTCCAAATGCTCATCTTCACCTTCATTGCCTGAGTCATCTTCCTCTCCTAAAAGAATTCAGAGAGTGTCTAAGTTTGTTTCTGACCGACTTC TCGACAAATTTTTTGATGCAACTGAGTTTGATTTTGATTACGAGCAAAGTGGAATATGGTCTCCTCCCATTAGAAGAAGCGCATTCTTGAGCTCACCGGG AAGGATATTCACCGAAGAGGAAATGCTTGAAAAACTTGGAAATGTAATGGATGCTCGTCGTGCTAGAAGACATAATAAAGCATGTTGTAATCAAGCCTGC ACATCCACATCAGCACACATTGCTCCAAGCCTGATATGA
AA sequence Show only first row Show all	>Potri.004G061100.3 pacid=42795722 polypeptide=Potri.004G061100.3.p locus=Potri.004G061100 ID=Potri.004G061100.3.v4.1 annot-version=v4.1 MDISKCSSSPSLPESSSSPKRIQRVSKFVSDRLLDKFFDATEFDFDYEQSGIWSPPIRRSAFLSSPGRIFTEEEMLEKLGNVMDARRARRHNKACCNQAC TSTSAHIAPSLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G061100 [exp]	0	1
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.015G006850 [exp]	4.69	0.7042
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	16.70	0.7651
AT5G42690			Protein of unknown function, D...		Potri.002G128400 [exp]	17.74	0.6724
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	20.71	0.7567
AT1G77610			EamA-like transporter family p...		Potri.005G177200 [exp]	24.33	0.7392
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	29.24	0.7311
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G121100 [exp]	31.74	0.7264
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	36.94	0.7173
AT3G51380		IQD20	IQ-domain 20 (.1)		Potri.005G106300 [exp]	38.66	0.5959
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	43.16	0.7082	Pt-SEC14.2

Compare expression of checked genes

Potri.004G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.