Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18810 813 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G16720 88 / 6e-18 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT4G31530 62 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G72420 61 / 3e-10 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1) AT1G17350 48 / 6e-06 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) AT2G34460 48 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003500 [exp] 93 / 1e-19 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.014G000400 [exp] 87 / 7e-18 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.011G079600 [exp] 57 / 1e-08 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 52 / 5e-07 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G076600 [exp] 50 / 8e-07 AT1G17350 318 / 4e-111 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Potri.006G086800 [exp] 43 / 0.0004 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G063800 [exp] 42 / 0.0006 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029255 [exp] 809 / 0 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 803 / 0 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034781 [exp] 97 / 8e-21 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10033322 [exp] 96 / 2e-20 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10009715 [exp] 60 / 1e-09 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10022420 [exp] 60 / 2e-09 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004936 [exp] 55 / 8e-08 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 55 / 9e-08 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029985 [exp] 50 / 9e-07 AT1G17350 336 / 1e-118 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family CL0202 [poplar] [flax] GBD PF08547 [poplar] [flax] CIA30 Complex I intermediate-associated protein 30 (CIA30) CL0063 [poplar] [flax] NADP_Rossmann PF13460 [poplar] [flax] NAD_binding_10 NAD(P)H-binding
Representative CDS sequence Show only first row Show all	>Potri.004G061200.12 pacid=42795781 polypeptide=Potri.004G061200.12.p locus=Potri.004G061200 ID=Potri.004G061200.12.v4.1 annot-version=v4.1 ATGGAGTGCTTTAACTCTACTAAACTGTCATCTCCCTGCACTTCTTCTATCCTCAACCTTCAGGGTTCTTCATCACTTGTTTGTAACAAATTTTCTAAAA ATTCAGTTCATCCTTGGTTGCTGTCCTCTCCACCTCCCAAACCATTCTTTCAACTTGATGATAGACTGCAGTGTAGACAGAAATCAGCTCATAGAACTTA CAGGGGCCCCATATTAGCGGAAGCTGGAAAGCAGGGCTGGGACTTGGGCAGGTTTTTGAAAACGTTGTATTTCTTCAACGGACCGCCATCTCCATCCAAG TTCTTTGAGTTTTTAATTGAGAAACTATCCAGTCCATCACCCAGCGAACCCAAAAACTCAATGGAAAGTTCTGGTATTGTCCTAGTTGTGGGAGCAACAG GTGGTGTTGGCAGAAGGGTAGTTGACGTCTTACAGAAGAAGGGACTGCCTGTCCGAGTATTGGCCAGAAATGAAGAAAAGGCAAGAAAGATGCTAGGACC AGATATTGACTTGATCATTGGAGACATTACTAAAGAGAGCACTTTGTTGCCTGAGTACTTCAAAGGAGTGAGGAAAGTTATAAATGCTGCTTCTGTCATT GTTGGCCCAAAGGAAGGCGACACCCCAGAAAGGGCAAAATATAGTCAAGGAATCAAGTTCTTCGAGCCAGAGATTAAAGGTGATTCACCTGAAATGGTGG AGTTTGTTGGGATGAGAAATTTGATTAATGCTGTAAAGGGGAGTGTTGGCCTTCGAAATGGGAAACTGCTATTTGGATGTGAAGACAATGGTTTTAGAGA TCTCGCTTGGGGGGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAAAGCACTTTTATAATTGATACAACTGGAGGGGAAAAAGGTGGACCAGCTGGG CTATTTAAAGGCGTTGTTTCCACTACAAACAATGGTGGCTTCACTAGTATCAGAACAAAGAATTTTTCAGTACCTGAGGATCTTTCTTCATATGATGGTT TGGAGCTACGCCTTAAGGGTGATGGACGTCGGTATAAACTTATTGTTCGCACTAGCCGTGATTGGGACACTGTTGGCTATACAGCAAGCTTTGACACCAC AGAAGGTCAATGGCAATCAATACGCCTGCCCTTTTCCTCTTTTGTCCCTGTATTTCGAGCTCGAACTGTATCAGATGCTCCCCCTTTTGATCTAAGGAGC ATTGTCTCACTTCAGCTTATGTTCAGCAAGTTTGAATATGATGGGAAATTGAATCCAACTTTTGTAGAAGGCCCATTTCAGCTTCCTGTATCAAGCATAA GGACATTTATAAAGGATCCTGTAACTCCTAGGTTTGTACACGTGAGCTCTGCAGGAGTTACCAGACCAGATCGGCCTGGTCTTGATCTCAGCAAACAACC TCCTGCTGTCCGCTTGAACAAGGAACTAGATTTTATCCTAACATTCAAGTTGAAGGGGGAAGATTTGATACGTGAAAGTGGTATCTCATATGCAATTGTC AGGCCTTGTGCTTTAACTGAGGAGCCTGCTGGAGCAGATCTCATTTTCGATCAAGGAGACAATATAACAGGTAAAATATCAAGGGAAGAGATTGCTCGGA TATGCATTGCGGCTTTGGAAAGCCCGTATGCACTTGATAAGACATTTGAGGTGGTTAAAAGTGTGATTCCATTCAGTGAACCATTCACAGTAGATCTGGA AAACCCACCTCAGGAGAAGGACTACGACATTTATTTTAAAGATTTGAAGGATGGCATCACTGGGAAAGAATTGCTAGAACAAAGTCCTGTTCCTGTCTGA
AA sequence Show only first row Show all	>Potri.004G061200.12 pacid=42795781 polypeptide=Potri.004G061200.12.p locus=Potri.004G061200 ID=Potri.004G061200.12.v4.1 annot-version=v4.1 MECFNSTKLSSPCTSSILNLQGSSSLVCNKFSKNSVHPWLLSSPPPKPFFQLDDRLQCRQKSAHRTYRGPILAEAGKQGWDLGRFLKTLYFFNGPPSPSK FFEFLIEKLSSPSPSEPKNSMESSGIVLVVGATGGVGRRVVDVLQKKGLPVRVLARNEEKARKMLGPDIDLIIGDITKESTLLPEYFKGVRKVINAASVI VGPKEGDTPERAKYSQGIKFFEPEIKGDSPEMVEFVGMRNLINAVKGSVGLRNGKLLFGCEDNGFRDLAWGALDDVVMGGVSESTFIIDTTGGEKGGPAG LFKGVVSTTNNGGFTSIRTKNFSVPEDLSSYDGLELRLKGDGRRYKLIVRTSRDWDTVGYTASFDTTEGQWQSIRLPFSSFVPVFRARTVSDAPPFDLRS IVSLQLMFSKFEYDGKLNPTFVEGPFQLPVSSIRTFIKDPVTPRFVHVSSAGVTRPDRPGLDLSKQPPAVRLNKELDFILTFKLKGEDLIRESGISYAIV RPCALTEEPAGADLIFDQGDNITGKISREEIARICIAALESPYALDKTFEVVKSVIPFSEPFTVDLENPPQEKDYDIYFKDLKDGITGKELLEQSPVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	0	1
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	1.00	0.9883
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	3.16	0.9801
AT1G54520			unknown protein		Potri.005G049500 [exp]	3.87	0.9788
AT2G35260			unknown protein		Potri.001G143400 [exp]	5.74	0.9697
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	7.34	0.9701
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	9.79	0.9768	RPL1.2
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	10.48	0.9717	CCD1.5
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	10.95	0.9701
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	11.22	0.9710
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	11.83	0.9708

Compare expression of checked genes

Potri.004G061200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.