Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29290 71 / 3e-17 unknown protein AT1G16950 43 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070500 [exp] 89 / 3e-24 AT1G29290 42 / 7e-06 unknown protein Potri.001G393101 [exp] 43 / 1e-06 AT1G29290 45 / 1e-07 unknown protein Potri.011G108101 [exp] 39 / 5e-05 AT1G29290 44 / 4e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029256 [exp] 78 / 4e-20 AT1G29290 64 / 2e-14 unknown protein Lus10007309 [exp] 72 / 2e-17 AT1G29290 62 / 8e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G061300.1 pacid=42796091 polypeptide=Potri.004G061300.1.p locus=Potri.004G061300 ID=Potri.004G061300.1.v4.1 annot-version=v4.1 ATGGCTCGTTTTGGAGCAGTGGTTCTCATTTTCTTGGTTTCTTTTGCTACCATTGTATCAAATATAGAGGGAAGAAAGTTATTGATGAGTACTGGTACTC CACAGGAGAACAGCAGCAGCAGCAACAAGGAGGGTACTAGCAGTGTCAGTTCTTTTGCAAGTTTGGTTCTTAGCGCTCTTCCTAAGGGTACAGTGCCATC ATCTTCTCCTAGCAAGAAGGGTCATGCCACTCTTGATAATGAACAACTCTTTGCAAGGCATCTTGCTAGCATCGATCGGATTCTACGGTCTGTTCCAAGT CCTGGTGTTGGCCATTAA
AA sequence Show only first row Show all	>Potri.004G061300.1 pacid=42796091 polypeptide=Potri.004G061300.1.p locus=Potri.004G061300 ID=Potri.004G061300.1.v4.1 annot-version=v4.1 MARFGAVVLIFLVSFATIVSNIEGRKLLMSTGTPQENSSSSNKEGTSSVSSFASLVLSALPKGTVPSSSPSKKGHATLDNEQLFARHLASIDRILRSVPS PGVGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29290			unknown protein		Potri.004G061300 [exp]	0	1
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	1.41	0.9737
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.001G332900 [exp]	2.00	0.9595
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	2.44	0.9580
AT2G38790			unknown protein		Potri.010G235400 [exp]	3.60	0.9232
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	4.24	0.9276	Pt-ATTPS11.1
AT1G29290			unknown protein		Potri.011G070500 [exp]	4.47	0.9253
AT1G64160			Disease resistance-responsive ...		Potri.005G100700 [exp]	4.89	0.9333
AT1G35710			Protein kinase family protein ...		Potri.014G195200 [exp]	5.29	0.9439
AT4G12731			unknown protein		Potri.001G226650 [exp]	7.48	0.9278
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.015G030700 [exp]	7.74	0.9237	Pt-MKK9.2

Compare expression of checked genes

Potri.004G061300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.