Plant FIBer expression Database

Potri.004G061400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26570 67 / 2e-11 ORF02, PHT2;1 phosphate transporter 2;1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G186601
[exp]
68 / 1e-11 AT3G26570 672 / 0.0 phosphate transporter 2;1 (.1.2)
Potri.010G046300
[exp]
68 / 1e-11 AT3G26570 697 / 0.0 phosphate transporter 2;1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029257
[exp]
557 / 0 AT3G26570 56 / 5e-08 phosphate transporter 2;1 (.1.2)
Lus10007310
[exp]
447 / 1e-151 AT3G26570 58 / 8e-09 phosphate transporter 2;1 (.1.2)
Lus10036858
[exp]
68 / 1e-11 AT3G26570 772 / 0.0 phosphate transporter 2;1 (.1.2)
Lus10006210
[exp]
68 / 1e-11 AT3G26570 777 / 0.0 phosphate transporter 2;1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01384 PHO4 Phosphate transporter family
Representative CDS sequence
>Potri.004G061400.3 pacid=42794259 polypeptide=Potri.004G061400.3.p locus=Potri.004G061400 ID=Potri.004G061400.3.v4.1 annot-version=v4.1
ATGTCCTCAAAGGAAGGAAAGGTTGCTGTTGATTTGACCGCTGAAATAGTCGGAAGGTGGAAAGAGACGTATCAATGGATACCGATTTTCGGAGCTTTTG
CCACCGTTGCTATGGCATTTTCTGCTGGTGCAAACAATCTCACAGCTCCGTTTTCAACACCAGTAGGATCAGGAGCATTGACTCTTTTGAAGGCCTCAAT
AATCGCTTGCCTAATCTATGTTCCGGGAGCTGCCTTTACAAGCAAGAGCACTGTCGATTCTTTATTTTCTGATTTTCTCAAAGAAAGTCAACCAGACGCA
GGATTTTTGATGTGGAGCCTGGTAGTTGCTCTAATCACTGCAGCGATCTGGCTTGCAGTTGCAACCTATTGGGAGTTACCAGTCTCATCTCAGCAGTCAA
TACAGAGTGCCCTGTTAGGAACCATCCTTGTCACTGAAGGTTTTGGCTACATACCCTTATGGAACAAGAGTGAAAATCACAATTTTAATGGTGGAGGACT
CCTCTGGATATCTCTTGAATGGACAGTTGCTCCATTAATCGCTTGTCTATGCTCCTACATCTTCTTCAAACTCTTGAGGGCGTTTCTTCTTCGATCAGAA
GATGCAGAGAAAAGGATTCTCATTTTCCTCCCTATCGACTACGGAATATCTACTGGACTACTTTGCCTCTTTGTCATATTTCAGATCAATGGAAACATTA
TATTTATCAATACATGGCTTTCTATAGTTGCTGTTTTGGTTGCTACACTGGTTGGAGCGATATTGTCATTGGTTGTGATAGTTTCCTTGACCATAAAGAA
GTCCAATGATATTCCAAATTGTAAGTCCAATAAGAAAAGCAGATCGATCGATCATCAATGCATAGAAATTCAGGATAAAACAAGTTCAATAAAAGATGAC
GAGAAGAACCACGAAGATATCGAAGAAATGTTGAGGGATTTCATGCAGACTAGAGTTCTTGAGACAGTCTATGAAGAGGAAGAGAGGAGTTGGGACTCAC
CACTACCGGATAAGATCCATGATTCTCAACCGCAAATTCAAGATTTTCAGCAGACACAATCAGTCTCTCAGAAAAGTTCTACAGATCAATTAACACAACT
CAAACAGTTGCTTGAATCTACTCCAAATAGGTTTGTTCAAACAAGGAACTTCCAGAGGATTGAGAAAAGAACATTAACGTCGGATGCCTCTACATATATC
AGAAAATTTGCGATTTCGATTATACGCCCTGTTATAGAGTATGACAGACGAACTCTTGTTCGACATGCTTTAGCTGAAAAATATGATGAAATGGAAGATT
TCTTCAGCTTCCCACACCTCCTTGCTTCATGTATCTTCGCGCTTCAATTTTCTATTGAGGTTGCTGCCATTGCAAGCCCATATGCAGCTATCCTTGATGT
GTTTGATCATAGAATTAAATATCTACGGAATGGGGAAGATGTGGAGTATGTGCATGTGAAATGGTGGTTTAGAGCAAGTACCGGACTAGTTGCTGCGATG
GGATTTTTCCTATGTGGATGGCGCTTGACTCGATGCCTAGGTGGGAAGCTAACTTACATGAGTAACTCAAGAGGGTTGGCATCACAGCTTTCCTCTGTGG
CAGCAGTGATGATGGTCACTAGAATGAATCTTCCTGCTTCAAGTATACATGCTTTTGTTGGATCTCTTTTAGGAGTTGGAATGGTCGATGACATTCGGAA
TGTTAATTGGAAACTTGTGCTCAAGTTCCTAGGTGGATGGATCCTAACAGTAATATTCTCTTGTGGGATTGCTTATGTGATCTTCTCAGCGTCTGTACAT
TCACCAGGATATGTAGTGCCCTGA
AA sequence
>Potri.004G061400.3 pacid=42794259 polypeptide=Potri.004G061400.3.p locus=Potri.004G061400 ID=Potri.004G061400.3.v4.1 annot-version=v4.1
MSSKEGKVAVDLTAEIVGRWKETYQWIPIFGAFATVAMAFSAGANNLTAPFSTPVGSGALTLLKASIIACLIYVPGAAFTSKSTVDSLFSDFLKESQPDA
GFLMWSLVVALITAAIWLAVATYWELPVSSQQSIQSALLGTILVTEGFGYIPLWNKSENHNFNGGGLLWISLEWTVAPLIACLCSYIFFKLLRAFLLRSE
DAEKRILIFLPIDYGISTGLLCLFVIFQINGNIIFINTWLSIVAVLVATLVGAILSLVVIVSLTIKKSNDIPNCKSNKKSRSIDHQCIEIQDKTSSIKDD
EKNHEDIEEMLRDFMQTRVLETVYEEEERSWDSPLPDKIHDSQPQIQDFQQTQSVSQKSSTDQLTQLKQLLESTPNRFVQTRNFQRIEKRTLTSDASTYI
RKFAISIIRPVIEYDRRTLVRHALAEKYDEMEDFFSFPHLLASCIFALQFSIEVAAIASPYAAILDVFDHRIKYLRNGEDVEYVHVKWWFRASTGLVAAM
GFFLCGWRLTRCLGGKLTYMSNSRGLASQLSSVAAVMMVTRMNLPASSIHAFVGSLLGVGMVDDIRNVNWKLVLKFLGGWILTVIFSCGIAYVIFSASVH
SPGYVVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26570 ORF02, PHT2;1 phosphate transporter 2;1 (.1.... Potri.004G061400
[exp]
0 1
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.004G191450
[exp]
7.00 0.9929
AT3G54320 AP2_ERF ATWRI1, ASML1, ... WRINKLED 1, WRINKLED, ACTIVATO... Potri.017G078600
[exp]
10.00 0.9915
AT5G27730 Protein of unknown function (D... Potri.006G122500
[exp]
12.84 0.9847
Potri.002G158700
[exp]
13.52 0.9915
AT4G12420 SKU5 Cupredoxin superfamily protein... Potri.008G032200
[exp]
15.74 0.9915
AT3G54040 PAR1 protein (.1) Potri.009G039950
[exp]
16.58 0.9914
Potri.005G059400
[exp]
19.13 0.9913
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Potri.018G033500
[exp]
20.49 0.9913 PtrAMT4-2
AT5G62670 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPas... Potri.003G080500
[exp]
21.28 0.9580 Pt-HA1.3
Potri.007G106900
[exp]
21.72 0.9908

Potri.004G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.