Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06410 1287 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 1121 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1118 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 1084 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1068 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1060 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 988 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 414 / 9e-132 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 390 / 4e-123 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G78580 392 / 2e-122 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070900 [exp] 1501 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.003G094500 [exp] 1169 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1140 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1124 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 1113 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.008G136500 [exp] 1110 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.015G074000 [exp] 1105 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 990 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 988 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005425 [exp] 1405 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1390 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1387 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1379 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10020741 [exp] 1222 / 0 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029821 [exp] 1221 / 0 AT1G06410 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10034585 [exp] 1127 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1109 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1107 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1090 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G061500.3 pacid=42795969 polypeptide=Potri.004G061500.3.p locus=Potri.004G061500 ID=Potri.004G061500.3.v4.1 annot-version=v4.1 ATGGTGTCTAGATCATATACCAATCTCTTAGATCTAGCTTCAGGTAACTTTCCGGCAATGGGTCAACCTCGGGAGAGAAAGCAGTTGCCTCGTGTAATGA CAGTTCCGGGAGTTATTTCCGAGCTTGATGATGATGCGGCCTCAGATGTGCCTTCATCAGTAGTTCAGGACCGCATGATCATTGTAGCGAATCAATTGCC GGTAAAAGCAAAGCGTATGCCAGATAATAAAGGATGGAGCTTTAGTTGGGATGAGGATTCTCTGTTATTGCACTTAAAAGATGGTTTGCCTGAAGATATG GAGGTTTTATATGTTGGTTCTTTGCGGGCTGATGTTGACTTGAGTGAACAAGATGATGTCTCGCAGGTTTTGTTGGATAGGTTTAATTGTGTTCCGGCAT TTCTACCTCCTGATATTTTGTCGAAGTTTTATCATGGGTTTTGTAAACAGCATTTGTGGCCGCTTTTTCACTATATGCTTCCTTTTTCGGGGAATCATGG TGGGCGATTTGATCGATCTTTGTGGGAGGCATATGTGGCAGCAAATAAGATCTTCTCGCATAAGGTGATTGAGGTTATAAACCCAGAGGAAGACTATGTT TGGATTCATGACTATCATTTGATGGTGCTGCCTACTTTCTTGAGGAGAAGGTTCAATGCATTGAGAATGGGATTCTTTCTTCACTGTCCATTTCCTTCGT CAGAGATATACAGGACTTTACCTGTTAGGGAAGAGATTCTTAAGGCACTTTTGAATTCAGACCTCATTGGCTTTCACACTTTCGATTATGCTCGACATTT TCTTTCTTGTTGCAGTCGAATGTTGGGGTTGGAATATCAGTCAAAGAGAGGTTACATTGGAATGGAGTACTATGGTAGGACTGTTGGAATAAAAATCATG CCAGTTGGGATTCATATGGGGCAGATTGAGTCTGTCTTGAAACTTGCAGACAAGGAGTGGAGGGTAGGAGAGCTAAAACAACAATTTGAAGGAAAGACAG TTTTACTTGGGGTTGATGATATGGACATCTTTAAAGGTGTAAATTTGAAGCTTTTGGCAATGGAACAGCTTCTGAAACAACACCAAAAGTGGCGAGGAAG GGCTGTTTTGGTGCAGATAACAAATCCTGCAAGGGGACGAGGGAGAGATGTTGAGGAATTGCAGGCTGAAATACAGGAAAGCTGCAGGAGGATTAATGAA ACTTTTGGTCGACCTGGCTATGAACCAGTTGTCTTTATTGATCGACCAGTATCTCTCAGTGAAAAAGCTGCATATTTCACCATTGCAGAGTGTGTCGTTG TGGCAGCTGTGAGAGATGGGATGAATCTTACTCCTTATGAGTATGTTGTGTGCAGGCAGGGTGTTTCTGGGTCGGAGTCTAGTGCAGAATCCAGTGGACC CAAGAAGAGCATGCTGGTTGTATCAGAGTTCATTGGATGTTCCCCTTCACTTAGTGGTGCAATTCGGGTCAATCCATGGAACATTGAAGCAACCGCTGAA GCAATAAATGAGGCGATTTCAATTGCCGATTCTGAGAAACAATTGCGACATGAGAAGCATTACAGGTATGTCAGCACACATGATGTGGCATATTGGTCAA GGAGCTTTTACCAAGACATGGAGAGGACTTGCAAAGACCATTTCATAAGGCGCTGCTGGGGAATTGGCTTAAGCTTTGGTTTCAGAGTTGTTGCGCTTGA TCGAAATTTCAAAAAATTAAATATTGATCATATTGAATCTGCATACATAAAGTCCAAAAAAAGAGCTATACTCTTGGACTACGATGGAACTGTAATGCCA CAAACATCCATCAATAAGACCCCAAGTTCTGAGGTCATTTCAATGATAAATACTCTTTGTAGTGATGTTAAGAACACCGTCTTTGTTGTCAGTGGAAGAG GAAGAGATAGTTTAGGCAAGTGGCTTGCTCCTTGCAAAAAACTTGGAATTGCTTCTGAACATGGGTACTTCGTGAGGTGGTCTGCAGATGATGTTTGGGA GAACTGCGGGCAGAGTAGTGATTTTGGATGGATTCAAATAGCTGAGCCTGTTATGAAATTATACACAGAAGCCACTGATGGATCTTCCATCGAGACCAAA GAGAGCGCTTTGGTTTGGCACCACAGGGATGCAGATCCTGGTTTTGGAGCTGCTCAGGCCAAGGAGATGTTGGACCATCTTGAAAGTGTGCTTGCAAATG AGCCTGTTGCTGTCAAAAGTGGTCAGTTTATTGTGGAAGTTAAGCCTCAGGGAATCAGTAAAGGTTCCGTGGCAGAAAAGATCTTTACATCAATGGCTGA AAGCGGAAGACAGGCTGATTTTGTATTGTGTATTGGCGATGACAGATCAGATGAGGATATGTTTGAAAGCATTGATAATGCAATAGCAAGTGGTATCCTT AACTCCAGTAAATCTGTATTTGCTTGCACTGTTGGTCAGAAACCTAGCAAAGCCAAGTACTATTTGGATGACACAGCTGATGTCATAAACATGCTTGAAA CTCTTGCAGAAGCTTCCGACCCTTCACCCTCTGCTGGAAACTCCCCTTGA
AA sequence Show only first row Show all	>Potri.004G061500.3 pacid=42795969 polypeptide=Potri.004G061500.3.p locus=Potri.004G061500 ID=Potri.004G061500.3.v4.1 annot-version=v4.1 MVSRSYTNLLDLASGNFPAMGQPRERKQLPRVMTVPGVISELDDDAASDVPSSVVQDRMIIVANQLPVKAKRMPDNKGWSFSWDEDSLLLHLKDGLPEDM EVLYVGSLRADVDLSEQDDVSQVLLDRFNCVPAFLPPDILSKFYHGFCKQHLWPLFHYMLPFSGNHGGRFDRSLWEAYVAANKIFSHKVIEVINPEEDYV WIHDYHLMVLPTFLRRRFNALRMGFFLHCPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGMEYYGRTVGIKIM PVGIHMGQIESVLKLADKEWRVGELKQQFEGKTVLLGVDDMDIFKGVNLKLLAMEQLLKQHQKWRGRAVLVQITNPARGRGRDVEELQAEIQESCRRINE TFGRPGYEPVVFIDRPVSLSEKAAYFTIAECVVVAAVRDGMNLTPYEYVVCRQGVSGSESSAESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAE AINEAISIADSEKQLRHEKHYRYVSTHDVAYWSRSFYQDMERTCKDHFIRRCWGIGLSFGFRVVALDRNFKKLNIDHIESAYIKSKKRAILLDYDGTVMP QTSINKTPSSEVISMINTLCSDVKNTVFVVSGRGRDSLGKWLAPCKKLGIASEHGYFVRWSADDVWENCGQSSDFGWIQIAEPVMKLYTEATDGSSIETK ESALVWHHRDADPGFGAAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGISKGSVAEKIFTSMAESGRQADFVLCIGDDRSDEDMFESIDNAIASGIL NSSKSVFACTVGQKPSKAKYYLDDTADVINMLETLAEASDPSPSAGNSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.004G061500 [exp]	0	1
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	2.82	0.7346
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.007G039400 [exp]	7.48	0.7530
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	8.30	0.7442
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	17.54	0.7002
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.012G078500 [exp]	34.49	0.7301	Pt-TPS8.1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	37.94	0.6953
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	53.66	0.6904
AT1G09010			glycoside hydrolase family 2 p...		Potri.013G021200 [exp]	53.70	0.6979
AT5G21940			unknown protein		Potri.006G219800 [exp]	59.24	0.6732
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	75.09	0.6760

Compare expression of checked genes

Potri.004G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.