Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29300 485 / 6e-170 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT3G14870 379 / 7e-128 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 377 / 1e-127 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 285 / 6e-92 Plant protein of unknown function (DUF641) (.1) AT3G60680 203 / 7e-60 Plant protein of unknown function (DUF641) (.1) AT4G34080 169 / 3e-49 Plant protein of unknown function (DUF641) (.1) AT4G33320 159 / 4e-45 Plant protein of unknown function (DUF641) (.1) AT2G32130 152 / 2e-44 Plant protein of unknown function (DUF641) (.1) AT5G58960 154 / 2e-41 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G30380 112 / 1e-26 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071000 [exp] 810 / 0 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 423 / 1e-145 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 414 / 5e-142 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 297 / 7e-97 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 204 / 5e-60 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 184 / 7e-53 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 175 / 6e-51 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 170 / 7e-48 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 159 / 1e-42 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007312 [exp] 552 / 0 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 534 / 0 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 444 / 4e-154 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 439 / 3e-152 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 286 / 3e-92 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 283 / 3e-91 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 194 / 3e-56 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 176 / 4e-50 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 174 / 2e-49 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 171 / 6e-48 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [poplar] [flax] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Potri.004G061600.1 pacid=42796320 polypeptide=Potri.004G061600.1.p locus=Potri.004G061600 ID=Potri.004G061600.1.v4.1 annot-version=v4.1 ATGGAGACAATCAAATGTAGATCACTCCCAAACAACAAGAGCAAGATAGCAAGAACATTCCAAAAAGTTATCAACCTCAAGACTGCAACTAGAATTGCTT CAAATAATGGGATTGGCATGTGTATGCTGACACCACACAACAAGTTCGATCAAGATGATTCAAACACCGCCTACAAACCTCAAAACACTAATAATCACAA GAAGAAAGATGCCAAGGCCAAGCGCAGAGCAGTCTTGGAGGCATTGCTGGCAAAGCTATTTGCAAGCATTACTACAATTAAAGCAGGTTACGCGGAGCTA CAAATGGCTCAGAATCCTTATTGTAGCGATGCTATACAAGCTTCAGATCAGGCTGTTGTTGATGAGTTGAAACAATTATCACAACTTAAGCGTAGTTTTT TCAAGAATGAGCTTGACCTTTCTCCCCAGGTTACTATGATGCTGGCGGAGATTCAAGAACAACAGGGCTTAATGAAGACCTATGAGATCACAATCAAGAA ACTGGAAGCAGGTGTTGAGGTTAAAGGTTCAGACATTGGTTCACTCAAGAAACAGCTTGATGAGGCCATAGCTTTTAACAAGTCTCTTGAGAAGAGACTA AATGCAAGTGGGCCTCTATCAATGTTCGACAACATTCGGTTTTCACTCCTAAATCCAACCCATTTTGTTCAATTCTTGCATCATGCTTTAAGGTCCGTGA GGAATTTTGTGAAACTAATGGTTTGTGAAATGGAGGTAGCCCGCTGGGATATTGAAGCAGCTGCAAAAGCAATTGAACCAGAAAACACTGTTTTCGCAAA TCCAAGCCACAGGTGCTTTGTCTTTGAATCTTTTGTGTGCAAAACAATGCTTGAGGGTTTCAATCATCCAAATGAAGAGCTTCAAAGTGAACACTACTAC TTCATTGAATTCAAAAAGCTCAAATCTTTGAACCCAAAACAGTTCTTGACTCAGAATCCAGACTCATCATTTGCACGATTCACAAGGGCTAAGTATCTTC AACTTGTTCATGCAAAAATGGAGTGCTCTCTGTTTGGGAATTTAAACCAGAGAAAGCTAGTGAATTCTGGTGGATTCCCAGATTCTGCTTTCTTTAATGC ATTTGTTGAGATGGCTAGAAGGTTATGGGCCTTGAATCTCTTAGCTTTCTCATTTGGTGAGGATGTCAGTATTTTTCAGGTAGCCAAGAATTGCAGATTC TCTGATGTCTACATGGAGGCTGTTACACAAGACTCAGTATTAGAAACCACCAACGCTGACACTGATCTCCTGGTAGCTTTCACAGTGGTTCCAGGATTCA AGATTGGCAAAACTGTGATACAGAGTCAAGTGTACTTGTCTCCGGCGAGTTCTTGA
AA sequence Show only first row Show all	>Potri.004G061600.1 pacid=42796320 polypeptide=Potri.004G061600.1.p locus=Potri.004G061600 ID=Potri.004G061600.1.v4.1 annot-version=v4.1 METIKCRSLPNNKSKIARTFQKVINLKTATRIASNNGIGMCMLTPHNKFDQDDSNTAYKPQNTNNHKKKDAKAKRRAVLEALLAKLFASITTIKAGYAEL QMAQNPYCSDAIQASDQAVVDELKQLSQLKRSFFKNELDLSPQVTMMLAEIQEQQGLMKTYEITIKKLEAGVEVKGSDIGSLKKQLDEAIAFNKSLEKRL NASGPLSMFDNIRFSLLNPTHFVQFLHHALRSVRNFVKLMVCEMEVARWDIEAAAKAIEPENTVFANPSHRCFVFESFVCKTMLEGFNHPNEELQSEHYY FIEFKKLKSLNPKQFLTQNPDSSFARFTRAKYLQLVHAKMECSLFGNLNQRKLVNSGGFPDSAFFNAFVEMARRLWALNLLAFSFGEDVSIFQVAKNCRF SDVYMEAVTQDSVLETTNADTDLLVAFTVVPGFKIGKTVIQSQVYLSPASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	1.00	0.8920
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	2.82	0.8434
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	4.89	0.8875
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	5.74	0.8764
AT1G69160			unknown protein		Potri.010G154200 [exp]	8.36	0.8353
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	10.24	0.8484
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	10.90	0.8454	XYL1.1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.016G035300 [exp]	12.00	0.8287	PIN2,Pt-PIN2.3
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	12.36	0.8294
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	12.84	0.7965

Compare expression of checked genes

Potri.004G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.