Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 1031 / 0 AAA-type ATPase family protein (.1) AT5G45720 910 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 304 / 8e-86 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 294 / 6e-83 AAA-type ATPase family protein (.1) AT4G24790 238 / 2e-65 AAA-type ATPase family protein (.1.2) AT1G77470 47 / 8e-05 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G24290 44 / 0.0005 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071300 [exp] 1874 / 0 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 289 / 2e-80 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 281 / 3e-78 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 271 / 1e-75 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 260 / 4e-72 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G181300 [exp] 59 / 1e-08 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 52 / 2e-06 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007316 [exp] 1068 / 0 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 1060 / 0 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 913 / 0 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10005422 [exp] 895 / 0 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 271 / 1e-74 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10033035 [exp] 251 / 6e-70 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 252 / 1e-69 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 173 / 1e-43 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10028543 [exp] 53 / 1e-06 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10018144 [exp] 52 / 2e-06 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [poplar] [flax] post-AAA PF12169 [poplar] [flax] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [poplar] [flax] P-loop_NTPase PF13177 [poplar] [flax] DNA_pol3_delta2 DNA polymerase III, delta subunit
Representative CDS sequence Show only first row Show all	>Potri.004G061700.2 pacid=42794890 polypeptide=Potri.004G061700.2.p locus=Potri.004G061700 ID=Potri.004G061700.2.v4.1 annot-version=v4.1 ATGACCAAGGCAGTCCGCACTAGGATTCTCAAGGATGCAAATGGTGATATCGGCGATCATCTCCGAAACCATATTCATTTGACCAATTGTATTCATCTGA AAAACCATATGCTTAAGCAAAGCCCCATACTGGCTGATAGGTCATTAATGCGGGACCTCATTACCCTTCAGAGGTCCCGATCTTTGAGAGATCCTTCGGC CAGTCCTCCTTCATGGCACTCACCTTCTGTAGTTGATTTACTTCCCAAGAAAGGTGACCCAGATGCGGCCATTCGAGAAGGTAGAAGCTCAGTTGGTACT GAGCGTCGAAGGGAAGGTAGGAGGTTGTCAGGTACTTCTCCACCCTTAGCAAATTTAGCACCATCAAAGGTCGTCCCAAGTGATATTAGTTTGGGTATTG ATGGGGTAGCGGCTATTAGTGATCGCAGTGTGAAGAGTGGAATAAGGGATGGTAGGAGAGTTGTTACGAGAGAAGAATTTAGTAGAAAAAGTAATAGGGC TGATCTATTGGGCGGTGATGAAGACCTTTTACAAGATCACGCTGTTAATAGTTTTATTCATGAAGCTGTTTCGGGGAATTCAGAATCAAAAGATAGAAAG AGTAAACATAAGGGGAAGCATAGTCAGGATATGCATATTAAGACCCTTTCAGAGCAGCTAAATGAGATTCCAAGAGGTAGCGACGTGGCATCTTCCAACA TGCATCTTCACGGAAGACACACACAACAGCAGAAAATAGGTGAGCATGAGACCAGTGTTAGTGGCTATAGTGGAGTGAATAGGGTGAAAAGGCGGAAGTT TCGAAATGCCAGAAGAACTCGGGCTGCTGCTCCAGCTTCAAGGGATGCTGGGGGACAGAAAGAAATGTCTGTTGCTTCTAATTCATTTGCTCAAGGTCCA GCACAGCCAAGGTATCACATGGAGGAAGAAGAATATGGGGACCAAAATGTCACAAGGGCTCCCAGAAATGGATGTGGAATTCCATGGAATTGGTCAAGAA TTCATCATAGGGGTAAGACATTCCTTGACATGGCTGGAAGGAGCTTTTCTTGTGGTTTGTCAGATTCAAGGAGAGATGGCACATTTTCCCATGGAAGAGA TTTTCCTGGTATGCCTGTGGCATCTGATCATTCTACTTCATCTACTAAATCTGATGTAGAGGCTTTGCCTTTACTAGTGGAGGCATCCGGATCCCATGAA AGCACTGATAATGCTGGTTGGGTGCATGACTATTCAGGAGAGCTAGGTATATATGCTGATCACTTGTTGAAAAATGATGTTGATTCTGAAGCAAGATCCA GTGAACAATGCAAGCTTGGGCAGAACCACAATGGCAGGCATCAAAATCTGACACAAAAGTACATGCCAAGAACTTTCAGAGATCTAGTGGGACAGAATTT AGTAGCACAAGCTCTCTCTAATGCTGTTTCTAGGAGGAAGGTTGGGTTGCTATATGTGTTTTATGGGCCTCATGGTACTGGGAAAACCTCATGTGCTAGG ATATTTGCCAGAGCTTTGAATTGTCAATCTCTGGAACATCCAAAACCTTGTGGCTTTTGCAATTCTTGCATTTCACATGATATGGGTAAGAGTCGAAATA TAAGGGAAGTTGGCCCAGTCAGTAATTTTGATTTCGAGAGCATTATGGATCTGCTTGACAATATGATTGTTTATCAGATCCCATCTCTATATAGAGTTTT TATCTTCGATGACTGTGATAGTCTGTCTCCTGACTGCTGGAGTGCCATATTGAAGGTCATTGATCGAGCACCCAGACGTGTAGTTTTTGTCCTTGTCTGC TCAAGTCTTGATGTTTTGCCTCATATAATTATATCCAGGTGCCAGAAATTCTTTTTCCCAAAGCTAAAAGATGCAGATATTATATATACTTTGCAGTGGA TTTCATCCAAAGAAGATATAGATATAGATAAGGATGCGCTAAAACTTATTGCATCTCGGTCAGATGGATCCTTGAGGGATGCTGAGATGACACTTGAACA ATTAAGTTTGCTTGGGCAGAAGATATCTGTTCCTCTGGTTCAGGAATTGGTTGGGCTAATCTCTGATGAAAAACTGGTGGATCTTCTTGATTTAGCATTA TCTGCAGACACAGTAAACACTGTGAAGAATTTGAGAGTCATAATGGAAACTGGTGTGGAGCCATTAGCTTTAATGTCACAACTTGCTACAGTTATCACTG ATATCTTAGCCGGTAGCTATGATTTCACAAAAGAAAGGCCTAGAAGAAAATTTTTTCGACGAAAGCCATTATCCAAAGAAGATATGGAAAAGCTGCGTCA GGCCCTCAAAACTCTGTCAGAGGCTGAAAAACAACTTCGAATGTCAAATGACAAATTAACATGGTTAACAGCTGCCTTGCTTCAACTTGCTCCTGATCAG CAGTATCTGCTCCCTAGTTCGTCCACAGAAACTAGTTTTAATCATAGCCCTCTGGCCCAAAATAACATGGGTGGAAGAGATATTTCCAGAAAAGGTGGTG AACATGAGATGCCCAATAATGGGAGAGATTTGCCAATGCATGTCAGATTGGAAAGTCTCCCTGGTGGAACTTCTGCTGATTTCCGCAACAATGGCTCAAC AAATGGTACTAGCATTGACAGAAAAAGAAATGCTGCGTCTGTGATGGCTCCTCAGTGGACACCTGTACAAACTTCTGATGCAATCCGGGTGAACAGCAGG CAGGTTTCTGGTAAAAGCCATAAGGGATATGAAGAAATTTGGTTGGAGGTGCTTGAGAAGATTCAAATTAACAGTATGAGAGAATTCTTGTACCAAGAAG GAAAGCTGATCTCTGTCAGTTTTGGTGCAGCCCCAACTGTGCAGTTGATCTTCAGTTCACATTTCACCAAATTGAAGGCAGAGAAGTTTAGGGCACATAT TTTACAAGCATTTGAATCTGTTCTTGGATCACCAGTGACAATTGAGATCAGATGTGAGTCGAACAAGGAAACAAGTGCAGGGTTCCGTGTGCCTCTTATT TTACCAGCTTCTAAAAATGGTTCATCTCAGATGGCTATAGACCCAGTGCTGAATGCTGGGAGCAGAATGCCTAGGACAGGAGATTATCTTGAAGGGAGGA GTGAAATTGTTGAAGTACCGACTTCTCCAAGAAAATATGAGGGCAATGAACCAACTAACCACAATGTAGAATCCAGTAGAAGAGGTTTACAGCACACTCG GGCAGGAGAATCAGTTTCGAATAAGAAGCCAGCCGTGGGGTCTTTGGTGGAAAGAAGAAAGCTTGGGGAAACAAGTCAGAGTAAGAGCATTGTGAGAAGC AAGGTTTCCCTTGCGCGTGTAATTCAGCAAGCTGAAGGATGTACACAGCAAGCTGGATGGTCAAAACACAAAGCAGTTTCTATAGCTGAAAAGCTTGAAC AAGAAAATTTGAGGCTGGAACCTAGATCAAGATGCTTGCTTTGCTGGAAAGCAACTAGAGTGACACGGCGGAAGCTTTCTCGTTTGAATATTAGGACACG AAAACCACATTCATTGCTGAAGCTTGTCTCGTGCGGAAAGTGTCTCTCTTCTAAATCTCCACGATAG
AA sequence Show only first row Show all	>Potri.004G061700.2 pacid=42794890 polypeptide=Potri.004G061700.2.p locus=Potri.004G061700 ID=Potri.004G061700.2.v4.1 annot-version=v4.1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLMRDLITLQRSRSLRDPSASPPSWHSPSVVDLLPKKGDPDAAIREGRSSVGT ERRREGRRLSGTSPPLANLAPSKVVPSDISLGIDGVAAISDRSVKSGIRDGRRVVTREEFSRKSNRADLLGGDEDLLQDHAVNSFIHEAVSGNSESKDRK SKHKGKHSQDMHIKTLSEQLNEIPRGSDVASSNMHLHGRHTQQQKIGEHETSVSGYSGVNRVKRRKFRNARRTRAAAPASRDAGGQKEMSVASNSFAQGP AQPRYHMEEEEYGDQNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRRDGTFSHGRDFPGMPVASDHSTSSTKSDVEALPLLVEASGSHE STDNAGWVHDYSGELGIYADHLLKNDVDSEARSSEQCKLGQNHNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCAR IFARALNCQSLEHPKPCGFCNSCISHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVYQIPSLYRVFIFDDCDSLSPDCWSAILKVIDRAPRRVVFVLVC SSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLAL SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRKPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ QYLLPSSSTETSFNHSPLAQNNMGGRDISRKGGEHEMPNNGRDLPMHVRLESLPGGTSADFRNNGSTNGTSIDRKRNAASVMAPQWTPVQTSDAIRVNSR QVSGKSHKGYEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQLIFSSHFTKLKAEKFRAHILQAFESVLGSPVTIEIRCESNKETSAGFRVPLI LPASKNGSSQMAIDPVLNAGSRMPRTGDYLEGRSEIVEVPTSPRKYEGNEPTNHNVESSRRGLQHTRAGESVSNKKPAVGSLVERRKLGETSQSKSIVRS KVSLARVIQQAEGCTQQAGWSKHKAVSIAEKLEQENLRLEPRSRCLLCWKATRVTRRKLSRLNIRTRKPHSLLKLVSCGKCLSSKSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18820			AAA-type ATPase family protein...		Potri.004G061700 [exp]	0	1
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.009G089500 [exp]	3.60	0.9143
AT3G49810			ARM repeat superfamily protein...		Potri.002G116500 [exp]	11.31	0.8685
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.012G106500 [exp]	11.31	0.8934
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.001G448100 [exp]	21.28	0.9079
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	22.75	0.8518
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G140800 [exp]	24.37	0.9090
AT5G65360			Histone superfamily protein (....		Potri.003G207852 [exp]	32.86	0.8719
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.004G086000 [exp]	32.98	0.8802
AT5G49100			unknown protein		Potri.010G012000 [exp]	38.80	0.9013
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	41.25	0.8778

Compare expression of checked genes

Potri.004G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.