Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 832 / 0 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 327 / 9e-102 ARM repeat superfamily protein (.1) AT3G46510 285 / 4e-86 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 256 / 2e-75 ATPUB14 plant U-box 14 (.1) AT1G23030 239 / 1e-69 PUB11 ARM repeat superfamily protein (.1) AT5G42340 239 / 2e-69 PUB15 Plant U-Box 15 (.1) AT1G71020 234 / 8e-68 ARM repeat superfamily protein (.1.2) AT2G28830 239 / 4e-67 AtPUB12 PLANT U-BOX 12 (.1) AT1G60190 226 / 3e-64 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 220 / 7e-62 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071400 [exp] 1083 / 0 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 351 / 7e-111 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 347 / 3e-109 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.006G107600 [exp] 342 / 1e-107 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.010G185900 [exp] 337 / 1e-105 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.012G078900 [exp] 293 / 7e-89 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 288 / 5e-87 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 278 / 2e-83 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 272 / 2e-81 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007317 [exp] 885 / 0 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10029266 [exp] 437 / 1e-148 AT1G29340 430 / 3e-146 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 378 / 3e-121 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 377 / 5e-121 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10007511 [exp] 355 / 1e-112 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 341 / 2e-107 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029267 [exp] 281 / 1e-89 AT1G29340 319 / 1e-104 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10029163 [exp] 283 / 5e-85 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 275 / 4e-82 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10040834 [exp] 273 / 2e-81 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G061800.1 pacid=42796761 polypeptide=Potri.004G061800.1.p locus=Potri.004G061800 ID=Potri.004G061800.1.v4.1 annot-version=v4.1 ATGGCTACTGCCGCTATATTTTCTTCTCTAAGGCGGCGACGATCGCCGTCTTTAGAGGTTTTCTTGGCACCGGTTGATTTTACCGACGTGGGGCTTGTAC AGACTCTTGTATCATTGTCAACAGAGCTGGTGTCTTCTTTCTCAGGGAAGTCACTCTTCTTTCAAAGAAAGAATTCTCGTTCTTTAATTCGTAAAATTGA AATCTTTGTTGTTTTATTGGAGTATCTGAGGGACTCTGGGGCTGGTTCTGCTTTATCTTCTCCCACATTTGCTTGTTTTAAAGAGCTTTATTTGTTGCTG TACCGCTCAAAAATATTGCTTGATTATTGTGTGCGATCCAGCAAATTATGGTTGTTGCTTCAAAACCATTCGATTTCGGGGCATTTTCATGATTTGAATC AGGAAATATCTACCCTTTTGGATGTTTTTCCATTGGATGATGTTGAACTGAGTGAGGATGTTAGGGAACAGATTGATCTTATGCAAACACAATCAAGGAG AACGAGGTTATTGATTGATAAGGATGAGGAGGCTTTGAGAGTCAGGTTGTTTTCGTTTCTTGATGAGTTTGAGAATGGAAGGATTCCTGGTCTGGCGGAG TTGAGGTTGTTTTTCGTGGAGGGTTTGGGGATTAAAGATGCCAAGAGTTGTATAACAGAAATTGAGTTCTTGGAGGAGCAAATTGTTAGTCACGAGGGAG ATATTGAGCCCACAACTTCGGTGCTTAATGGGTTTGTCGCAATTGCTCGGTATTGTAGGTTTTTGCTTTATGGGTTTGGGGAAAACGAGGTGGAGTTGCA AATTGGGAATCAGAAGAAGCGGAGAAAAGGGTTGATTGCTCAAGAGATTGCAGAAACTTTTATTACAATACCCAAGGATTTTTTCTGTCCGATATCGTTG GATTTGATGCGAGATCCGGTGATAATTTCAACTGGGCAGACTTATGATCGGAGTTCAATATCTAGGTGGATGGACGAAGGGCACTGTACTTGCCCCAAGA CGGGGCAGATACTCATGAACACTCGCCTTGTTCCAAATCGGGCTTTGAGGAATCTGATCGTGCAATGGTGTACTGCTCATGGAATCCCTTATGACCCTCC AGAGAATACAGACTCATCTGTGGAGGCTTTTGCAGCGACTATGCCTTCCAAAGCTGCAATTGAAGCCAACAGAGCTACAGCAACGCTTCTAATTCATCAG CTGGCAAATGGTTCGCAAGGTGCAAAGACTGTGGCTGCTCGTGGGATACGTTTGTTAGCAAAAACTGGAAGAGAAAACCGTGCTTTCATTGCAGAAGCTG GTGCGATTCCCTACCTTTGTGAACTGCTGTCTTCTACAAACTCTGTTGCACAAGAGAATTCTGTAACAGCAATACTTAATTTATCCATTTATGAAAAGAA TAAAAGCCGAATTATGGATGAAAAAGGTTGTCTGGGTTCGATTGTTGAAGTATTGAGGTTTGGACTCACAACAGAGGCAAGGGAAAATGCAGCAGCGGCA TTGTTTAGCCTGTCAGCTGTTCATGACTACAAGAAGAGAATAGCAGATGAGGAAGGGGCAGTTGAAGCCTTAGCTGGCCTATTGAGAAAAGGGACACCAC GTGGGAAGAAGGACGCTGTCACAGCTTTATTCAATCTGTCAACTCATACAGAAAATTGTGTGAGAATGATAGAAGCAGGTGCAATTGCAGCACTAGTCGG GGCTTTGGGAAAGGAAGGGGTTGCAGAGGAAGCAGCCGGTGCATTGGCTTTGATTGTGAGGCAACCAATTGGGGCTAAAGCAGTGGGGGGAGAGGAAATG GCCGTGGCAGGGCTAATAGGAATGATGCGTTGTGGAACACCAAGAGGAAAAGAAAATGCTGTTGCTGCACTGCTTGAGTTATGCCGGAGTGGCGGGACAG ATGCAACTGAGAAAGTGCTCAAGGCACCGGCATTGGCGGGTTTGCTTCAGAGTCTGCTGTTCACAGGCACAAAGCGGGCAAGAAGGAAGGCAGCATCACT TGCCAGAGTGTTTCAGAGGTGTGGGAATTATCCATTGCAGTTTGGCGGATTAGGTGCCGGATATGCATTCGCTGGAAACTCAGCTGCAAATAGGGATCCG AGTTTTGTCAGCGAAGTGTCAGTGCCTGTGTCCATATCAGTGTCAGTTTTATAG
AA sequence Show only first row Show all	>Potri.004G061800.1 pacid=42796761 polypeptide=Potri.004G061800.1.p locus=Potri.004G061800 ID=Potri.004G061800.1.v4.1 annot-version=v4.1 MATAAIFSSLRRRRSPSLEVFLAPVDFTDVGLVQTLVSLSTELVSSFSGKSLFFQRKNSRSLIRKIEIFVVLLEYLRDSGAGSALSSPTFACFKELYLLL YRSKILLDYCVRSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPLDDVELSEDVREQIDLMQTQSRRTRLLIDKDEEALRVRLFSFLDEFENGRIPGLAE LRLFFVEGLGIKDAKSCITEIEFLEEQIVSHEGDIEPTTSVLNGFVAIARYCRFLLYGFGENEVELQIGNQKKRRKGLIAQEIAETFITIPKDFFCPISL DLMRDPVIISTGQTYDRSSISRWMDEGHCTCPKTGQILMNTRLVPNRALRNLIVQWCTAHGIPYDPPENTDSSVEAFAATMPSKAAIEANRATATLLIHQ LANGSQGAKTVAARGIRLLAKTGRENRAFIAEAGAIPYLCELLSSTNSVAQENSVTAILNLSIYEKNKSRIMDEKGCLGSIVEVLRFGLTTEARENAAAA LFSLSAVHDYKKRIADEEGAVEALAGLLRKGTPRGKKDAVTALFNLSTHTENCVRMIEAGAIAALVGALGKEGVAEEAAGALALIVRQPIGAKAVGGEEM AVAGLIGMMRCGTPRGKENAVAALLELCRSGGTDATEKVLKAPALAGLLQSLLFTGTKRARRKAASLARVFQRCGNYPLQFGGLGAGYAFAGNSAANRDP SFVSEVSVPVSISVSVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Potri.008G026800 [exp]	1.00	0.8569
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	1.73	0.8255
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	5.09	0.8508
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	5.91	0.8189
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.008G096400 [exp]	8.77	0.8045	Pt-RPK1.1
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G112500 [exp]	13.26	0.7922
AT1G10350			DNAJ heat shock family protein...		Potri.008G194000 [exp]	14.96	0.7661
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	16.24	0.7911
AT2G46080			unknown protein		Potri.008G085600 [exp]	17.54	0.8229
AT4G04960			Concanavalin A-like lectin pro...		Potri.004G044200 [exp]	19.77	0.7791

Compare expression of checked genes

Potri.004G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.