Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 403 / 2e-126 SD2-5 S-domain-2 5 (.1) AT5G35370 321 / 2e-95 S-locus lectin protein kinase family protein (.1) AT1G34300 318 / 1e-94 lectin protein kinase family protein (.1) AT2G19130 310 / 9e-92 S-locus lectin protein kinase family protein (.1) AT4G00340 300 / 2e-88 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 271 / 4e-81 Protein kinase superfamily protein (.1) AT4G21390 266 / 1e-75 B120 S-locus lectin protein kinase family protein (.1) AT5G60900 263 / 2e-75 RLK1 receptor-like protein kinase 1 (.1) AT1G61380 262 / 1e-74 SD1-29 S-domain-1 29 (.1) AT1G61360 258 / 4e-73 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254600 [exp] 399 / 6e-125 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 387 / 2e-120 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.004G014700 [exp] 377 / 9e-119 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 377 / 3e-118 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 376 / 3e-118 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014450 [exp] 365 / 7e-116 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014200 [exp] 365 / 3e-114 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014301 [exp] 357 / 2e-113 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014636 [exp] 348 / 3e-112 AT4G32300 300 / 3e-95 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000249 [exp] 389 / 5e-121 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 384 / 3e-119 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 350 / 6e-107 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10039315 [exp] 346 / 2e-104 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10024195 [exp] 322 / 4e-96 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10024348 [exp] 315 / 2e-93 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 310 / 4e-92 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 309 / 1e-91 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031805 [exp] 297 / 4e-87 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024343 [exp] 300 / 1e-86 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G061900.2 pacid=42794634 polypeptide=Potri.004G061900.2.p locus=Potri.004G061900 ID=Potri.004G061900.2.v4.1 annot-version=v4.1 ATGGCTATATGGCCTTTGAGTGATATCCTGCTAGTGCAGCTTTTGATCATGTTATCTCCTGCATACTTCCTAGAAGCTCAAATTCATGACTCCACAGCAC AAATATCGACATCATGGACAAACAATTTGTCCATTCCAGCGGGAGACTTCGATTTCTACCAAATGATCTTGATGAGTGAGTCTGAGTCTTTTGCTTGTGG ATTTTACTCCAAAGACCAGAAAAATGATTCCTTCTATTTTGCAGTTGTATCACTCCAAATGTCACATTATCAAGATGGTAGTTTTAATTTCACTCTTGAG AATGTCATATGGTTGGCAAATGAAAATAAGCCTGTTGGACAGAACGCAACTCTAAAGTTACTTCCAGAAGGAAATTTGGTTCTGAGAGATGCAGATGGAG CTTTAGTCTGGTCTACCAACACGTCTAACATGTCTGTTGCAGGTATAAAGATGATGGAAACAGGAATGCTTGTGCTTCAAGACCACAATAATAAGACTGT GTGGCAATCTTTTAGTACTACAGCACATGTGTCCACTTCATGGACGAATAATTATCGCATATCAGCCATGCCTTATAATACATATAAAATAATCATGATG CACGGAGCTGTTTTTTCTTGTGGATTTCACTCCACGGACCAGAATTCCTTCTATTTTGCAATATGGAAGCAATCGGAATATGCTGGGGATGCCTTATGGT TAGCAAACAGAAACAGGCCTGTTGGTGAGAACGCAACTTTACAATTATTACCAGATGGAGATTTGATCTTGAGAGATGCTGCTGGAACTTTCGTTTGGTC TACTAACACATCTAACATGTCTGTTGCGGGTATGAGGATGATGGAAACTGGAAACCTTGAGCTTTATGATGTCAATAACAAGACTGTTTGGAATTCATTT GATCATCCTTCTGATGTACTGTTTCTTGGGAACAAATTAGTGGCAGGACAAAAGCTGGTGGCAAGTGTTTCGAAAACTGATAGATCTGAAGGTGGCTTCA GCCTTTTTGTGATCCCAAAAGGTTTGTTTGCTTCTTACCAAGCTAATGCGCCACAAAAGTACTTCAAATTTTCAGTTTTTGGGGGCATAGACAGCCTCCA ACTAAGTCATGATGAATCCTCTGGTAATCTTGCTTTACTTATAATGTCAGCTTCACCTGATGAGCCGAATACAATGCTTACAAGCACCGTTAAATACTCA GCGACGGCTTACATGAAATTTGATCCTGATGGGTATCTCAGAATTTATGATGGCAACATGATTGACGGGGTTGATCTGTTGACAGATATGATGAGTGCAT GTGATTACCCAACAGCTTGTGGTAATTATGGGCTGTGCTTAAATGGACAGTGCTCGTGCCCAGCAGGATTTGCTCGAGCCAATACCACAAATGATCAAGG CAACTACAATTGCTGGCAGATTAGTCCAACCACATGTGAAAATCCAAAATCCCATTCTCTTCTTCCCCTGGAAGATGTCTACTATTTCAATTATGTTGAC CCTGAGGCAGCGGTCCTGAATGGAACAGACATGAAGAGTTGTAAAGATGCATGTTTGAAAAACTGTTCATGCAAGGCTGCTCTATTTAAGTATTACGTTA ATAATTCTCATGGGAATTGTTTTTTGCCCTCACCAGTTCTTACACTAACGGCTGATGGTAAGGAAAGAAACAATTACCAATCTTATGCCTTCATCAAAAT TTCTAATGATGGAGAGAATGGAAGTGCTTTTACATCTTCTATCAATCCTACATCTTCTATCAATCCTAAAATAATAGCAGGATCAACTATTGGAGCCATC CTTCTTATGAGTTTAATTGCTGGTCTATGTATTATGGTTTTGAGGAAGAAAAGAGATCGAGAGGAAGGAATAGAAGACTTGAATCAACTATCAGGAATGC CCATGAGATTCACATACCAAGAACTAAGAGTAGCAACTTGGGATTTTGAGAAGAAGCTTGGAGGAGGAGGGTTTGGATCAGTTTTTGAAGGAATTCTAGA AAATGGAGAAAAAATTGCAGTAAAGCGCCTAGATGCTTTAGGCCAAGGGGAGAAGGAATTCTTGGCTGAGGTCAAAACTATAGGAAGCATCCATCATGTC AACCTGGCGAGGCTAATTGGATTCTGTGCTGCTAAATTGCATAGGCTTTTAGTCTATGAGTTCATGTGCTGTGGGTCTTTGGATAAGTGGATTTTCTGCA GGGAACCACTACTACATCCTCTGGACTTCCAAACTAGAAGAAACATTATCATGGATATAGCAAAGGGGCTGGCCTATCTCCATGAAGAATGCAGACAAAG AATAGTCCACTTAGACATCAAACCACAAAACATTTTGTTGGATGCAAATCTGCATGCTAAGATCTCTGATTTTGGCTTGTCTAAGTTGATTGACAAGGAT CAAAGTCAAGTGGTGACCACAATGAGAGGAACTCCTGGGTACTTGGCTCCTGAATTATTCAGCTCAGTCATCACAGAGAAGGCAGATGTTTATAGTTTTG GAATCGTAGTCATGGAAGTTGTCCGCGGAAAGAAAAATCTGGATAGGTCACAGCCTGAGTGCATGCATTTGCTCCCTATTCTTATGAAGAAGGCACAGGA GGATCAATTGATTGATATGGTTGACAATAGCAGTGAGGATATGCAATTGCACAGGTTAGAAGCTGTGGAGATGGTGAGGGTTGCTATTTGGTGTCTGCAA AGTGATCACACCAGGAGGCCTAGCATGTCAACAGTGGTTAAGGTCTTAGAGGGCACCATGGGTGTTGAAGCAGACCTAGACTATTGCCTTCAGAATGCAA CAACAATGGCAGCAATAAGAAGAGAGGCAGTGCTGGACAGTACTGCCACATTGCTGCCATCACTACTATCAGGACCAAGGTGA
AA sequence Show only first row Show all	>Potri.004G061900.2 pacid=42794634 polypeptide=Potri.004G061900.2.p locus=Potri.004G061900 ID=Potri.004G061900.2.v4.1 annot-version=v4.1 MAIWPLSDILLVQLLIMLSPAYFLEAQIHDSTAQISTSWTNNLSIPAGDFDFYQMILMSESESFACGFYSKDQKNDSFYFAVVSLQMSHYQDGSFNFTLE NVIWLANENKPVGQNATLKLLPEGNLVLRDADGALVWSTNTSNMSVAGIKMMETGMLVLQDHNNKTVWQSFSTTAHVSTSWTNNYRISAMPYNTYKIIMM HGAVFSCGFHSTDQNSFYFAIWKQSEYAGDALWLANRNRPVGENATLQLLPDGDLILRDAAGTFVWSTNTSNMSVAGMRMMETGNLELYDVNNKTVWNSF DHPSDVLFLGNKLVAGQKLVASVSKTDRSEGGFSLFVIPKGLFASYQANAPQKYFKFSVFGGIDSLQLSHDESSGNLALLIMSASPDEPNTMLTSTVKYS ATAYMKFDPDGYLRIYDGNMIDGVDLLTDMMSACDYPTACGNYGLCLNGQCSCPAGFARANTTNDQGNYNCWQISPTTCENPKSHSLLPLEDVYYFNYVD PEAAVLNGTDMKSCKDACLKNCSCKAALFKYYVNNSHGNCFLPSPVLTLTADGKERNNYQSYAFIKISNDGENGSAFTSSINPTSSINPKIIAGSTIGAI LLMSLIAGLCIMVLRKKRDREEGIEDLNQLSGMPMRFTYQELRVATWDFEKKLGGGGFGSVFEGILENGEKIAVKRLDALGQGEKEFLAEVKTIGSIHHV NLARLIGFCAAKLHRLLVYEFMCCGSLDKWIFCREPLLHPLDFQTRRNIIMDIAKGLAYLHEECRQRIVHLDIKPQNILLDANLHAKISDFGLSKLIDKD QSQVVTTMRGTPGYLAPELFSSVITEKADVYSFGIVVMEVVRGKKNLDRSQPECMHLLPILMKKAQEDQLIDMVDNSSEDMQLHRLEAVEMVRVAIWCLQ SDHTRRPSMSTVVKVLEGTMGVEADLDYCLQNATTMAAIRREAVLDSTATLLPSLLSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G061900 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G013156 [exp]	10.95	0.8340
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	11.35	0.8589
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	22.89	0.8505
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	24.24	0.8445
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	27.60	0.8368
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	27.92	0.8417
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.001G469800 [exp]	42.89	0.7859
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.004G101400 [exp]	48.98	0.8180
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	73.46	0.8175
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	78.74	0.8149

Compare expression of checked genes

Potri.004G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.