Plant FIBer expression Database

Potri.004G062000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17030 648 / 0 unknown protein
AT2G47010 642 / 0 unknown protein
AT4G09965 88 / 9e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G381400
[exp]
687 / 0 AT1G17030 706 / 0.0 unknown protein
Potri.001G381600
[exp]
686 / 0 AT1G17030 698 / 0.0 unknown protein
Potri.002G187700
[exp]
648 / 0 AT2G47010 690 / 0.0 unknown protein
Potri.019G076900
[exp]
592 / 0 AT2G47010 587 / 0.0 unknown protein
Potri.001G382000
[exp]
375 / 6e-128 AT1G17030 389 / 1e-133 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009978
[exp]
599 / 0 AT2G47010 647 / 0.0 unknown protein
Lus10007453
[exp]
579 / 0 AT2G47010 653 / 0.0 unknown protein
Lus10000888
[exp]
308 / 8e-100 AT2G47010 320 / 7e-105 unknown protein
Lus10024442
[exp]
209 / 3e-64 AT1G17030 231 / 4e-73 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G062000.4 pacid=42796460 polypeptide=Potri.004G062000.4.p locus=Potri.004G062000 ID=Potri.004G062000.4.v4.1 annot-version=v4.1
ATGGATGGAAAGAAGAACCCAGTTTATTTTCTTCCTGTTCTGGCCGTGGTTATTCTTTCAGGAGCCTTACATGCTACAGCTGGAAATGAGTATGTATCAG
CATTAGGCGATCCTGGAATGAGAAGAGATGGTTTAAGGTTGGCAATAGAGTCATGGAATCAATGCAATGAGGTTGGAGAAGAAGTTCCTTCTATGGGCAG
CCCAAGAGCTGCAGATTGCTTTGACATATACAAGGCTTCTCCGAAGGCAGAAGAAAAGAACTGCGCCCTCTGCAATTCCTTGCCCTATGCATTGGTCCAC
AGAGTCACAGAGGAAGACAACAAGCTTAGTGTTGGAAACCCTTTTCTAGGAGTGCAACCAAATGCCCTTTATGATGTAAACCTTTATGCTGCGGATAAGG
AACTCTATTTAGGCTCAAAATGTCAAGTTGAAGACACTCCTAATCCGTGGCAATTCTGGATGATCATGCTCAAGAGCGGCAACATGGACACTTACTCTGC
CAAGTGCCCCAAAAATGGCCACAGAGTGGGGCCTTTCGGCCCGGACACTGGATTCCCTTGCTTTGGAAAAGGGTGCATGAACCAGCCATTCATTTATCAT
GATTACACCACGTTGCAAGGGCCTAATAGGACGACACTTAAAGGAAGGTTTTATGGGTCATGGGATTTGGATGCAGATTTGAGCAAGGGACTAATGGATA
ACATTTCATACCATTCTGTGACATGGGAGAAGGAGGTAGGAAAGGGAAGTTGGATTTTTCATCATCTTTTGAGGACCTCAACAAAGTATCCATGGTTGAT
GCTTTACTTGAGATCAGATGCCACAAATGATGTTTCTGGTGGGTACCATTACCCAACAAGGGGTATGTCAAAAATTATCCCGGAATCACCAAACTTCAAA
GTAAGGTTCACTTTAAATGTAATCAATGGTGGGGGTCCTAGCAGCCAGTTCTACCTGATGGACATGGGAAGCTGTTGGAAGAACGATGGGAAACCTTGCG
ATGGAAATGTTACTTCAGATGTCACTCGATACAGCGAAATGATCATAAATCCAAACATAAGTTCATGGTGCCATCCAAACAACCTCAATGTGTGCCCTCC
TTACCATACATTTCCCGATGGAACACGTATCCATCGCAATGACACTGCTCGCTTCCCTTATGCCGCCTATCACTTGTACTGTTCTCCTGGGAACGCAGAG
CATCTTGAATTTCCTTATAGTTTGTGTGATCCCTATAGCAATCCTCAGCCTCAGGAGATATTACAGATTTTGCCACATCCAGTTTGGGGTGAGTATGGAT
ATCCTACCAAGCAAGGTGAGGGTTGGATTGGTGACCCGAGAACTTGGGAACTTGATGTTGGGAGGTTGTCGCAATCACTTTACTTCTACCAGGATCCTGG
GACTCCTCCGGCTAGGAGGCAGTGGATGTCCATTGATTTAGGAACAGAGATATTCAAGGCCCCTAATCAAGTTGCTGAATGGACTGTTAGTGACTTTGAC
ATCATTATACCTGAGCAATGA
AA sequence
>Potri.004G062000.4 pacid=42796460 polypeptide=Potri.004G062000.4.p locus=Potri.004G062000 ID=Potri.004G062000.4.v4.1 annot-version=v4.1
MDGKKNPVYFLPVLAVVILSGALHATAGNEYVSALGDPGMRRDGLRLAIESWNQCNEVGEEVPSMGSPRAADCFDIYKASPKAEEKNCALCNSLPYALVH
RVTEEDNKLSVGNPFLGVQPNALYDVNLYAADKELYLGSKCQVEDTPNPWQFWMIMLKSGNMDTYSAKCPKNGHRVGPFGPDTGFPCFGKGCMNQPFIYH
DYTTLQGPNRTTLKGRFYGSWDLDADLSKGLMDNISYHSVTWEKEVGKGSWIFHHLLRTSTKYPWLMLYLRSDATNDVSGGYHYPTRGMSKIIPESPNFK
VRFTLNVINGGGPSSQFYLMDMGSCWKNDGKPCDGNVTSDVTRYSEMIINPNISSWCHPNNLNVCPPYHTFPDGTRIHRNDTARFPYAAYHLYCSPGNAE
HLEFPYSLCDPYSNPQPQEILQILPHPVWGEYGYPTKQGEGWIGDPRTWELDVGRLSQSLYFYQDPGTPPARRQWMSIDLGTEIFKAPNQVAEWTVSDFD
IIIPEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17030 unknown protein Potri.004G062000
[exp]
0 1
AT3G58600 Adaptin ear-binding coat-assoc... Potri.013G117900
[exp]
1.41 0.9370
AT3G05990 Leucine-rich repeat (LRR) fami... Potri.010G090800
[exp]
1.41 0.9294
AT5G63400 ADK1 adenylate kinase 1 (.1.2) Potri.015G092800
[exp]
2.23 0.9129
AT1G30620 MURUS4, HSR8, U... UDP-D-XYLOSE 4-EPIMERASE 1, MU... Potri.011G156100
[exp]
2.82 0.9016 MUR4.2
AT2G04850 Auxin-responsive family protei... Potri.002G222600
[exp]
3.00 0.9216
AT1G09430 ACLA-3 ATP-citrate lyase A-3 (.1) Potri.005G004900
[exp]
6.00 0.9188
AT1G19300 ATGATL1, GATL1,... PARVUS, GAOLAOZHUANGREN 1, GAL... Potri.002G132900
[exp]
6.48 0.8642
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Potri.001G020600
[exp]
7.14 0.8720
AT3G50760 GATL2 galacturonosyltransferase-like... Potri.007G031700
[exp]
7.48 0.9044
AT5G48460 Actin binding Calponin homolog... Potri.002G251600
[exp]
8.24 0.8478

Potri.004G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.