Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18880 382 / 7e-131 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G45710 366 / 1e-125 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2) AT1G32330 211 / 2e-63 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 208 / 3e-62 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G13980 201 / 6e-60 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT3G02990 200 / 2e-59 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT4G17750 198 / 2e-58 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G22830 186 / 9e-55 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 181 / 7e-53 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT2G26150 179 / 1e-52 HSF ATHSFA2 heat shock transcription factor A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071700 [exp] 704 / 0 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 313 / 3e-103 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.003G095000 [exp] 234 / 5e-72 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G138900 [exp] 231 / 6e-71 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.001G320900 [exp] 220 / 1e-66 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.017G059600 [exp] 217 / 1e-65 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.013G079800 [exp] 208 / 4e-62 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.002G048200 [exp] 190 / 1e-56 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 185 / 9e-55 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007318 [exp] 486 / 1e-171 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10015237 [exp] 471 / 6e-166 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10005420 [exp] 463 / 2e-161 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10029269 [exp] 331 / 1e-112 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10040091 [exp] 229 / 3e-70 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 225 / 7e-69 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10011065 [exp] 218 / 2e-66 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10016634 [exp] 219 / 3e-66 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10040911 [exp] 218 / 3e-66 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10000312 [exp] 218 / 5e-66 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.004G062300.1 pacid=42795183 polypeptide=Potri.004G062300.1.p locus=Potri.004G062300 ID=Potri.004G062300.1.v4.1 annot-version=v4.1 ATGGATGAATCACAGGGCAGTCCGAACTCGCTGCCGCCTTTTCTTGCAAAGACGTATGAGATGGTGGATGATCCTTCGACGGATCCAATTGTTTCTTGGA GTCAGAGCAATAAGAGTTTTACCGTATGGGATCCACCGGAGTTTGCCAGGGATTTGCTGCCCAGATTTTTTAAGCATAATAATTTCTCTAGCTTCATCAG ACAGCTCAATACTTATGGTTTTAGGAAAATTGATCCCGAGCAATGGGAATTTGCTAATGAAGATTTTATAAGAGGTCAACCATTTCTAATGAAGAACATC CATAGACGGAAGCCAGTTCATAGCCATTCGTTGCAGAATCTTCAAGGACAAGGCTCTAATCTGCTGACTGATTCAGAAAGACAGAGTATGAAGGATGATA TAGAGAGGCTTAAACGTGATAAAGAAGCACTTATTTTGGAGTTACAAATGCAGGAACAAGAGCGGAAAGGATTTGAGATGCAAATTGAGGGTTTGAAAGA GAAGTTGCAACAAATGGAACGAAGACAACAAACTATGGTATCTTTTGTGACCCGAGTGATGCCTAAACCAGGTCTTGCCTTAAATCTAATGCCGCAGTTG GAAGGTCATGATAGAAAGAGAAGGCTGCCGAGAATTGGTTGTCTACACAGTGAAGCCAGTAGTAATGAGGATAATCAGACGGTGACTTCCCAAGCTCTGT CTAGAGAAAATGCAGATGGTAATTCTTTTGCCCTGTTAAACATGGAGCAGTTTGATCAGTTGGAATCATCCCTGACATTCTGGGAGAATATGGTAAATGA TGTTGTTCAAACCCACAGTCATAACACTAAAACGATAGAGATGGATGAGTCTACAAGTGGTGCAGAAAGTCCAGCTATATCTTGTGCACAGCTCATTTTT GATTTTCGCCCTAAAACACCTGGTATTGACATGAATTCTGAACCTTCTATAGCTGTTGTGCCAGAGCCTGTTTCACCGAAGGAACAACCTGCTGGGACTG CTCCCGCTGTGGCAACTGGAGTCAACGATGTATTCTGGGAACAGTTTTTAACTGAGAATCCTGGTTCAACTGACACACAGGAAGTTCAATCTGAAAGAAA GGATTCTGATGGTAGAAAAAATGAAATAAAACCTGGTGATCCCAGAAAATTTTGGTGGGATATGAGGAATGTAAATAATCTTACAGAGCAGATGGGGCAT CTTACTCCTGCTGAAAGAACTTGA
AA sequence Show only first row Show all	>Potri.004G062300.1 pacid=42795183 polypeptide=Potri.004G062300.1.p locus=Potri.004G062300 ID=Potri.004G062300.1.v4.1 annot-version=v4.1 MDESQGSPNSLPPFLAKTYEMVDDPSTDPIVSWSQSNKSFTVWDPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPFLMKNI HRRKPVHSHSLQNLQGQGSNLLTDSERQSMKDDIERLKRDKEALILELQMQEQERKGFEMQIEGLKEKLQQMERRQQTMVSFVTRVMPKPGLALNLMPQL EGHDRKRRLPRIGCLHSEASSNEDNQTVTSQALSRENADGNSFALLNMEQFDQLESSLTFWENMVNDVVQTHSHNTKTIEMDESTSGAESPAISCAQLIF DFRPKTPGIDMNSEPSIAVVPEPVSPKEQPAGTAPAVATGVNDVFWEQFLTENPGSTDTQEVQSERKDSDGRKNEIKPGDPRKFWWDMRNVNNLTEQMGH LTPAERT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	0	1
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	1.41	0.9003
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	2.00	0.9013	STGA1.2
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	3.87	0.8512
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	4.89	0.8705
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	6.32	0.8632
AT4G16530			Family of unknown function (DU...		Potri.001G123200 [exp]	11.61	0.7977
AT5G20300		Toc90	translocon at the outer envelo...		Potri.006G063500 [exp]	12.84	0.8152
AT2G31130			unknown protein		Potri.013G118000 [exp]	13.41	0.8318
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	14.00	0.8154
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	14.69	0.7900

Compare expression of checked genes

Potri.004G062300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.