Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23535 254 / 5e-88 KOW domain-containing protein (.1) AT5G54600 61 / 1e-11 Translation protein SH3-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415400 [exp] 62 / 2e-12 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042614 [exp] 271 / 6e-95 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10022069 [exp] 269 / 6e-94 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10006905 [exp] 260 / 2e-90 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10014683 [exp] 125 / 2e-35 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10005180 [exp] 65 / 5e-13 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10038125 [exp] 65 / 5e-13 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF00467 [poplar] [flax] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Potri.004G062600.1 pacid=42795056 polypeptide=Potri.004G062600.1.p locus=Potri.004G062600 ID=Potri.004G062600.1.v4.1 annot-version=v4.1 ATGGGTTGGAAAGCAGCTGAGAAACTGATTAGGCACTGGAAAGTACTCAGAGGAGATAATGTTATGATAATCAGAGGAAAGGATAGAGGTGAGACTGGCG TTGTTAAGCGTGTCGTTCGCTCTCAAAATCGTGTTATTGTCGAGGGCAAAAATCTGGTGAAAAAGCACATCAAGGCAGGTGAAGGTCATGAAGGTGGAAT CTTTACTGTTGAAGCCCCACTTCATGCATCAAATGTTCAAGTTGTTGACCCAGTTACAGGGAGGCCATGCAAGGTTGGAATTAGATATCTAGAAGATGGT ACTAAAGTAAGAGTTTCAAGAGGTGAAGGATCATCTGGGTCCATAATTCCTCGTCCTGAGATTTTAAAGATAAGGACAACTCCAAGACCTACTGTTGCTG GTCCCAAGGATACCCCAATGGATCTTGTGTTGAAGAAGACATACGATGCTAAAACCGGGAAGGGAATGCCTGACCTGTGA
AA sequence Show only first row Show all	>Potri.004G062600.1 pacid=42795056 polypeptide=Potri.004G062600.1.p locus=Potri.004G062600 ID=Potri.004G062600.1.v4.1 annot-version=v4.1 MGWKAAEKLIRHWKVLRGDNVMIIRGKDRGETGVVKRVVRSQNRVIVEGKNLVKKHIKAGEGHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGIRYLEDG TKVRVSRGEGSSGSIIPRPEILKIRTTPRPTVAGPKDTPMDLVLKKTYDAKTGKGMPDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23535			KOW domain-containing protein ...		Potri.004G062600 [exp]	0	1
AT2G46290			Transducin/WD40 repeat-like su...		Potri.010G100101 [exp]	3.00	0.9366
AT4G14320			Zinc-binding ribosomal protein...		Potri.005G092500 [exp]	8.24	0.9399
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	10.19	0.9374	RPL2.2
AT1G74270			Ribosomal protein L35Ae family...		Potri.008G059400 [exp]	11.40	0.9348
AT5G50810		TIM8	translocase inner membrane sub...		Potri.015G102000 [exp]	12.96	0.9045
AT5G48760			Ribosomal protein L13 family p...		Potri.001G314500 [exp]	15.09	0.9332	RPL13.1
AT4G31460			Ribosomal L28 family (.1)		Potri.018G006900 [exp]	15.58	0.8978
AT2G31725			Eukaryotic protein of unknown ...		Potri.013G127400 [exp]	18.16	0.9124
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G211200 [exp]	18.97	0.9356
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.004G157500 [exp]	19.74	0.9031

Compare expression of checked genes

Potri.004G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.