Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45700 194 / 8e-61 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 183 / 3e-57 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 176 / 2e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 113 / 3e-29 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 105 / 2e-25 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 102 / 2e-24 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G55900 97 / 7e-23 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G55960 87 / 2e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 45 / 2e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 44 / 3e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072000 [exp] 395 / 1e-139 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G173700 [exp] 107 / 5e-26 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 105 / 3e-25 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 102 / 1e-24 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.006G100800 [exp] 96 / 1e-22 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 95 / 1e-22 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 94 / 2e-22 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 92 / 1e-21 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G054700 [exp] 92 / 1e-20 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007321 [exp] 220 / 3e-70 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 214 / 6e-68 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 105 / 2e-25 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 105 / 2e-25 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10002484 [exp] 96 / 1e-22 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025376 [exp] 96 / 4e-22 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004810 [exp] 94 / 9e-22 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 89 / 3e-20 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 88 / 6e-20 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 87 / 1e-19 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G062900.2 pacid=42796519 polypeptide=Potri.004G062900.2.p locus=Potri.004G062900 ID=Potri.004G062900.2.v4.1 annot-version=v4.1 ATGGTGTCCAAGTCCCTCAAAAGAAGCCCCACGAAATCCATGAAGGATCCGAGGAACCACCGCCCCCGCCCCCGCCGCTGCAACAAGAGGAAATCTCCGG TCAAAACCACCTCTTCCATCATCTCAACCATCAACAAAACTATCTTCACTTGCAAGCGCCGCCTCTCCAAGCTTTTCTCTAAATTGGCCCGCATTAGCAC CCCAAATAGCCGCTACAAAGACTACAAAATCTTGAAAACTGGGTCCAAATATCATGACCTAGAAGTTGAGAAGGATACCGTTTGTAGAGCGCTTTTCTTC AACGAACGGTTACCTCCCTTGATTTCTCCTGATAAGAGGACTGTTTTTCTTGATCTTGATGAGACCTTAGTGCATTCTAAAGCAGGCCCACCACCCCAAG AGTTTGATTTTGTTGTGAGGCCCAAGATTGATGGAGAGATGATGATTTTTTACGTGTTGAAGCGACCGGGAGTTGATGCTTTCTTGGAGGCTTTGGGGAC TAAATACGAGGTCGTGGTGTTCACCGCCGGGTTAAAGGAATACGCTACGCTGGTTCTTGATAGGATTGATCCAAAGGGGGTGATTTCGCACCGGCTTTAT CGGGATTCTTGCAAGCAAGTTGACGGGAAGTTTGTCAAGGACTTGTCTGAAATGGGGAGGGACTTGAAGAGGGTGGTAATTGTTGATGATAATCCTAGTT GCTACATTTATCAGCCTGAAAATGCAATTCCAGTGAAGCCCTTTCTTGATGATCTTGGAGATTTAGAGTTGGGGAAGCTGGCTACTTTCTTTGACCGGTG TGATTGTTTTGAGGATATGAGGGATGCTGTGAAGGAGTATGTTGGTGGTGAAGGAGACGTGGAGGTACAAGTGGAAGTCTAA
AA sequence Show only first row Show all	>Potri.004G062900.2 pacid=42796519 polypeptide=Potri.004G062900.2.p locus=Potri.004G062900 ID=Potri.004G062900.2.v4.1 annot-version=v4.1 MVSKSLKRSPTKSMKDPRNHRPRPRRCNKRKSPVKTTSSIISTINKTIFTCKRRLSKLFSKLARISTPNSRYKDYKILKTGSKYHDLEVEKDTVCRALFF NERLPPLISPDKRTVFLDLDETLVHSKAGPPPQEFDFVVRPKIDGEMMIFYVLKRPGVDAFLEALGTKYEVVVFTAGLKEYATLVLDRIDPKGVISHRLY RDSCKQVDGKFVKDLSEMGRDLKRVVIVDDNPSCYIYQPENAIPVKPFLDDLGDLELGKLATFFDRCDCFEDMRDAVKEYVGGEGDVEVQVEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.004G062900 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.006G035200 [exp]	4.35	0.9687
AT4G15830			ARM repeat superfamily protein...		Potri.008G221700 [exp]	4.47	0.9682
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	4.58	0.9668
AT2G42110			unknown protein		Potri.006G192500 [exp]	6.92	0.9642
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.009G040200 [exp]	7.74	0.9655
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	9.38	0.9594	Pt-SYP111.1
AT5G16250			unknown protein		Potri.013G127900 [exp]	10.24	0.9629
AT5G06590			unknown protein		Potri.016G064200 [exp]	13.63	0.9400
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	15.96	0.9481	Pt-CYCMS1.1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	18.46	0.9501

Compare expression of checked genes

Potri.004G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.