Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18910 385 / 6e-136 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 360 / 5e-126 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37810 306 / 1e-104 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 304 / 4e-104 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT1G31885 292 / 9e-99 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 262 / 1e-87 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G80760 218 / 6e-70 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 213 / 9e-68 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 166 / 7e-50 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 111 / 2e-30 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072100 [exp] 479 / 3e-173 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 313 / 9e-108 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 303 / 9e-104 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 241 / 2e-79 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 234 / 1e-76 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 216 / 3e-69 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 213 / 3e-68 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 213 / 6e-68 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 210 / 9e-67 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029274 [exp] 436 / 3e-156 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10007322 [exp] 323 / 7e-113 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 306 / 5e-105 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 225 / 9e-73 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10020929 [exp] 222 / 2e-71 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10033268 [exp] 210 / 9e-67 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10010153 [exp] 209 / 3e-66 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10035918 [exp] 206 / 2e-65 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10025744 [exp] 205 / 5e-65 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10017358 [exp] 205 / 6e-65 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.004G063000.1 pacid=42794561 polypeptide=Potri.004G063000.1.p locus=Potri.004G063000 ID=Potri.004G063000.1.v4.1 annot-version=v4.1 ATGGCTGAAATCGATGGGACTAATGGAAATGGAAACCATGGAGGAGTTGTTTTGGATATTAAAGATAATTATCCTTCATCTAGCTCCATCAAGGAAGTTT CTGTCTTGAATTTCTATGTGCCTTTCATGCAAAAGTTGGTAGCTGAGATAGCCGGAACATACTTCTTGATATTTGCCGGTTGCTCGTCGGTGGCCGTGAA TTTGAACTTTGACAAGGTTGTGACACTTCCAGGAATATCAATAACTTGGGGGCTGGCTGTGATGGTCTTGGTTTACTCTGTTGGTCATATCTCTGGTGCC CATTTCAACCCTGCTGTCACCCTTGCCTTTGCCACTTGCAAGAGATTTCCATGGAAACAGGTTCCGGCTTACGTAGCATGTCAAGTCATCGGAGCAACTC TAGCAGCAGGAACAATCCGATTACTTTTTCAGGGCGATCAAGATCACTTCACAGGAACAATGCCAGCGGGATCCAATCTGCAGTCCTTTGTTGTTGAGTT TATAATCACATTCTACCTCATGTTCATCATTTCCGGCGTCGCCACTGATAACAGAGCTATTGGCGAACTGGCTGGACTTGCTGTCGGTTCCACCGTGCTG CTTAATGTGATGTTTGCAGGGCCAATTTCAGGGGCGTCAATGAATCCTGCAAGAAGCTTGGGGCCTGCAATTGTGTCCCATCAATACAAGGGCCTGTGGA TTTACATCGTGTCGCCCATCCTTGGAGCTCAGGCCGGCGCATGGGTGTATAATTTGATCAGGTACACTGATAAGCCTCTGCGGGAGATCACCAAGAGTGC GTCGTTCCTGAATGGCAAAGAAAGTTCTTGA
AA sequence Show only first row Show all	>Potri.004G063000.1 pacid=42794561 polypeptide=Potri.004G063000.1.p locus=Potri.004G063000 ID=Potri.004G063000.1.v4.1 annot-version=v4.1 MAEIDGTNGNGNHGGVVLDIKDNYPSSSSIKEVSVLNFYVPFMQKLVAEIAGTYFLIFAGCSSVAVNLNFDKVVTLPGISITWGLAVMVLVYSVGHISGA HFNPAVTLAFATCKRFPWKQVPAYVACQVIGATLAAGTIRLLFQGDQDHFTGTMPAGSNLQSFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVL LNVMFAGPISGASMNPARSLGPAIVSHQYKGLWIYIVSPILGAQAGAWVYNLIRYTDKPLREITKSASFLNGKESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.004G063000 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.005G251700 [exp]	2.44	0.6358
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	3.87	0.6373	NPGR2.2
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	16.52	0.5985
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	33.94	0.6255
AT1G58120			unknown protein		Potri.017G047700 [exp]	52.23	0.5805
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	65.49	0.5799
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.008G011900 [exp]	78.11	0.5840
					Potri.013G135900 [exp]	204.31	0.5244

Compare expression of checked genes

Potri.004G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.