Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 1020 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 917 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 899 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 887 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 887 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 879 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 868 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 855 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 852 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 694 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072300 [exp] 1792 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072566 [exp] 1138 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 1130 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385200 [exp] 990 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072741 [exp] 979 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 978 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 976 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 973 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 972 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 1088 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 922 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 863 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 793 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 780 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10038153 [exp] 775 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 773 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 736 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 702 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 322 / 2e-100 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G063200.3 pacid=42796481 polypeptide=Potri.004G063200.3.p locus=Potri.004G063200 ID=Potri.004G063200.3.v4.1 annot-version=v4.1 ATGACTATGAAGTTCTCTCCCTCAGTAGAGAAGAACCCAGACAAGAACAGACTTTGCAACCTTTTAAGCATATTTTGGGTAGTACAAATGTCTTTTTCCC TTAGATATGCCTTCCTCGTATCAGTTCTAACTTTCATTTGCTTGGAGACACCAAGGTTGGCTGCTGCTAGGCTTCCTCAAGATGAGGTGGATGCTTTAAA CCTAATTACCAAGAAGATGGGCGCCAATGGCTGGAATTTCAATGCTGATTCTTGTGGAGAATATCTTCCTCATGTCCAACTGACGGATCCTGACAGGAAC GTTACCTGTGACTGCGAATTTGCGAACAATACCTGTCATATTACTTCCCTGAAGTTCAAGCGTTTTAGCCTTGCAGGAGAACTTCCACCTGAACTCATTC AGCTTCGTTATCTTGAGAGCATTGATCTTTCTTACAATGAACTTGGTGGGTCTATACCAAGTCAATGGGCTTCATTGCAGCTAAAAATGATTGCTCTTCT AGCAAACCGGTTATCAGGGAACATTCCAAGCTATTTGGGGAACTTTACCAGCCTTGCATACTTGGACCTTGAATTAAATCAATTTTCTGGAATGATCCCG CGTGAGCTTGGGAACTTAGTTAACCTTGAAACTTTGATTCTATCCTCCAACAAATTGGATGGAAATTTGCCAAAGGAACTTGCTGAGCTGAAAAACCTGA CTGACTTTAGAATAAACGATAACAACTTCAATGGGAGTATACCAGATTTTGTACAAAACTGGAAGCAACTTAAAAGACTAGAAATGGTAGCTAGTGGACT GGAAGGACCCATTCCATCCTCCATCTCTGCTCTGAAAACATTAACAGACTTGAGGATCACTGACATAAATTTCACAAATCAGTCATTTCCTGATCTTAGT AACATTGTAGGCCTCTCACGGCTGTTGTTGAGGAATTGCAATATATCTGGAGAAATTCCTCCATACATCTGGGAAATGAGTAAACTGCGAATTTTGGATC TCAGTTTTAATAAGTTACACGGGAATCTTCCAAATGCTATAACCACAGAGGCACTGGTATTCATCTTTCTAAGTGGAAACCGCCTCACAGGAAATATACC AATGTTTAGGAAAGGAATGAGTGTAGATCTTTCCTATAATAATTTCTCACAGCAAAGCTCTGGGCAGCCTGCTTGTCAGCAGGGAATGGATGTAACTCTA AACTTGTTCCGAAGTTCTTCAATGGGAAATGACATAGGAGGAGCATGCATGGATGATCTCACTTGTGATAAGTACTGGCACTCTATGTACATCAATTGTG GAGGACAAAATGTTAAAACAAATGGCAGCACATATGAAGGAGATGCAGCAGCTAGTAGCGGTGCTGCAATATTCTATCGGAGTGAGGATGAATGGGGAAT TAGCAGCACCGGAGACTTTATGGATGACAACGATTTCCAAAACAGAGCTTATATTGAAAACATGCCATCATTAAATATTAATGAATTGTACCAAACAGCA CGCGTTTCTCCAATTTCACTCACTTACTATCATCGTTGTTTGGAAAATGGGAATTACACTGTGAGTCTACACTTCGCTGAGATCAGATTCAAAAATGATA ATACATATAACAGCCTTGGAAGACGATTATTTGATGTCTATATTCAGAATAATCTAGTTGAGAAGGATTTCAATATAGAAGTTGAAGCTGCAGGGGTTGC CAAGCCAGTCACAAAAATACACAATGCTACTGTCACAAATAATATTTTGGATATCCACTTATATTGGGCTGGCAAAGGGACTACAAGAATTCCTGTTAGT GGAGTCTATGGCCCCCTCATATCAGCTATTTCTGTATATCCCAACTTCAAACCACGTTTTTCGGGAGGGGGAAAGACAAAAACTGTACCAATAATTCTTG GAGTTGTAGGCTTTTGTCTCGTATTCTCAGCATTGGCTATCTTTTGGTGGAAATGCTATTTCAGAGTACAGAAAAAAAGACAAAAAGGTCTTGAAGGAAT AGAAATCCAAACTGTTTCTTTTACCTTAAAGCAAATTAAAGCTGCCACAGGCAATTTTAATCCGGCAAACAAAATTGGAGAAGGTGGATTTGGACCAGTT TACAAGGGCTTGTTACCTGATGGTACTGTGATTGCTGTGAAGCAGCTCTCATCTAAGTCAAGTCAGGGAAATCGTGAGTTTTTGAACGAGATCGGCGTGA TTTCATGCATGCAGCACCCACATCTTGTAAAACTTCATGGGTGTTGTATTGAAGGAGATCAACTATTGTTAGTATATGAATACATGGAAAACAACAGCCT TTCTCGTGCTTTGTTTGGTCCAGAAAATCAACTACATTTGGACTGGAAAACAAGGCAGAAGATATGCATCGGAATCGCCAAAGGCTTGTCTTTTTTACAT GAAGAATCAAGACTCAAGATTGTTCATAGAGACATCAAAGTCACCAATGTTCTCCTTGATAAGGATCTCAATCCTAAAATATCTGATTTTGGATTGGCTA AACTAGACGAACGAGAAAAAACCTATATCAGCACCAGAGTTGCTGGAACTGTAGGATATATGGCACCAGAATATGCATTATGGGGTCGTTTGACATATAA AGCAGATGTTTACAGTTTTGGAATTGTGGCACTGGAGATTGTGAGTGGGAAGCATAACAAGAGTTGTGGGCCAGATGATCAATTCTCTTGTCTTCTAGAC TGGGCCTGCCATTTAGAGCAAAATGGAAACCTGATTGAGATAGTGGATCAGAAGCTGGGATCTGAATTCAACAAGGTAGAAGCAGAAAGGTTGATAAAAG TAGCTCTCTTATGCGCTAATGCTTCACCATCACTAAGGCCAATCATGTCTGAAGTTGTTAGCATGATAGAAGGAACTAGGATCATACCTGATGTGATCCC TGAACCAAATAGTGAAGATTTGAGGTTTAAGGCCATAAGAGGACCTGACGAACGAATAAGAAGTAGTTTGAAAGGCAATCAGAACTCTAGTTCGATCTTA GATAGATCGGATAACAACAGTTCCCATGTGTACACGGATGATGATGATCCATATGAAACCGATAAAGAGTTGAATGCGAGGTTTGACACTAGGAGCAAAC ACTATAAACAGCCAGAAAGCCGGAGTGAGGTTTCAACTTCAGTATTGTCAGAAACAGCCGTTTCCTCAACTTCTGTTCATGATCCTTTTGATATCAATAT AAGCTCCTGA
AA sequence Show only first row Show all	>Potri.004G063200.3 pacid=42796481 polypeptide=Potri.004G063200.3.p locus=Potri.004G063200 ID=Potri.004G063200.3.v4.1 annot-version=v4.1 MTMKFSPSVEKNPDKNRLCNLLSIFWVVQMSFSLRYAFLVSVLTFICLETPRLAAARLPQDEVDALNLITKKMGANGWNFNADSCGEYLPHVQLTDPDRN VTCDCEFANNTCHITSLKFKRFSLAGELPPELIQLRYLESIDLSYNELGGSIPSQWASLQLKMIALLANRLSGNIPSYLGNFTSLAYLDLELNQFSGMIP RELGNLVNLETLILSSNKLDGNLPKELAELKNLTDFRINDNNFNGSIPDFVQNWKQLKRLEMVASGLEGPIPSSISALKTLTDLRITDINFTNQSFPDLS NIVGLSRLLLRNCNISGEIPPYIWEMSKLRILDLSFNKLHGNLPNAITTEALVFIFLSGNRLTGNIPMFRKGMSVDLSYNNFSQQSSGQPACQQGMDVTL NLFRSSSMGNDIGGACMDDLTCDKYWHSMYINCGGQNVKTNGSTYEGDAAASSGAAIFYRSEDEWGISSTGDFMDDNDFQNRAYIENMPSLNINELYQTA RVSPISLTYYHRCLENGNYTVSLHFAEIRFKNDNTYNSLGRRLFDVYIQNNLVEKDFNIEVEAAGVAKPVTKIHNATVTNNILDIHLYWAGKGTTRIPVS GVYGPLISAISVYPNFKPRFSGGGKTKTVPIILGVVGFCLVFSALAIFWWKCYFRVQKKRQKGLEGIEIQTVSFTLKQIKAATGNFNPANKIGEGGFGPV YKGLLPDGTVIAVKQLSSKSSQGNREFLNEIGVISCMQHPHLVKLHGCCIEGDQLLLVYEYMENNSLSRALFGPENQLHLDWKTRQKICIGIAKGLSFLH EESRLKIVHRDIKVTNVLLDKDLNPKISDFGLAKLDEREKTYISTRVAGTVGYMAPEYALWGRLTYKADVYSFGIVALEIVSGKHNKSCGPDDQFSCLLD WACHLEQNGNLIEIVDQKLGSEFNKVEAERLIKVALLCANASPSLRPIMSEVVSMIEGTRIIPDVIPEPNSEDLRFKAIRGPDERIRSSLKGNQNSSSIL DRSDNNSSHVYTDDDDPYETDKELNARFDTRSKHYKQPESRSEVSTSVLSETAVSSTSVHDPFDINISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063200 [exp]	0	1
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	4.47	0.8283	Pt-TCP1.1
AT5G23520			smr (Small MutS Related) domai...		Potri.018G145524 [exp]	4.58	0.8239
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	6.70	0.8530
AT4G03500			Ankyrin repeat family protein ...		Potri.019G105900 [exp]	6.70	0.8185
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	7.07	0.8594
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	9.74	0.8612	Pt-GLU1.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	19.05	0.8167	Pt-BRI1.2
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	19.69	0.8288
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	19.74	0.8163
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107800 [exp]	21.16	0.7928

Compare expression of checked genes

Potri.004G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.